Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40250 260 / 5e-84 RING/U-box superfamily protein (.1) AT1G23980 236 / 7e-75 RING/U-box superfamily protein (.1) AT2G18650 173 / 5e-50 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT4G30400 169 / 5e-48 RING/U-box superfamily protein (.1) AT3G48030 161 / 4e-46 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G57750 119 / 1e-31 RING/U-box superfamily protein (.1) AT5G05810 97 / 2e-22 ATL43 RING/U-box superfamily protein (.1) AT4G40070 95 / 1e-21 RING/U-box superfamily protein (.1) AT4G28890 94 / 8e-21 RING/U-box superfamily protein (.1) AT3G03550 91 / 2e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G078200 [exp] 526 / 0 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 288 / 7e-95 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 288 / 7e-95 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.018G098500 [exp] 171 / 2e-48 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 170 / 4e-48 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 97 / 7e-22 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 94 / 5e-21 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 94 / 7e-21 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 92 / 2e-20 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012987 [exp] 239 / 4e-76 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10029178 [exp] 230 / 2e-72 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10014526 [exp] 227 / 5e-71 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10032161 [exp] 218 / 2e-67 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10015502 [exp] 156 / 1e-43 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10019973 [exp] 155 / 2e-43 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10023617 [exp] 97 / 2e-22 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10012745 [exp] 92 / 1e-20 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10031515 [exp] 90 / 6e-20 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10029794 [exp] 91 / 7e-20 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.015G073600.1 pacid=42776357 polypeptide=Potri.015G073600.1.p locus=Potri.015G073600 ID=Potri.015G073600.1.v4.1 annot-version=v4.1 ATGTGCAGATTTCTATTTGAAGTCAAACAAAAAGATGGCTTTGCAATATATCCACCTCCTGTATCACCTCCCTCATCAGTCTCGTCTCCATACAATGGTC TCAACTATGAAAAAGAATCAACCCCGCCTTCATCTTCTCTTAACAAAATTAGTCCCGTGCTTCTTTTGGTTATAGGAGTCCTTGCTGTTATTTTCTTTGT TTCTGGTCTTCTTCATTTGCTTGTTAGATTCCTCCTCAAGAGGGCATCTTTTTCCCCAATTTATCATTCCAATAGGTTCCCAGAAACCTCAGGGTCTCAT TCTATTCAAAGACAGCTTCAACAGCTGTTTCGCTTGCATGATTCGGGTCTAGACCAAGCTTTCGTTGATGCTCTACCTGTGTTTTACTACAAAGATATCA TGGGTTCAAAGGAGCCATTTGACTGTGCAGTTTGTCTCTGCGAGTTCTCAGGCCAAGAAAGGCTCAGGTTGCTTCCTCTATGTAGCCACGCTTTTCACAT TGACTGCATAGATACCTGGCTTCTCTCAAACTCAACGTGCCCTCTGTGTAGAGGAACCCTTTTGGGCTCTAGTTTTCACATGGAAAATCCACTGTTCAAT TTTGATCTCTCAAGGGAATTATCAAATGGATTCTCTAGTGAAGGAGAGAGTGGATCTTCGAATTGTCAAAAATCAGTTACTATTGTGGAGGACAAAGGTG TTGGTGAAAAGAGGGTATTTTCAGTGAGACTGGGCAAGTTTAAAAGCTTGAATGGTGGAGAAGGCAGTGGACAGAAACAACATGGAGAGACCAGCAGGTC TAATTTGGATGCTAGAAGATGTTACTCACTGGGAACAGTTCAGTATGTGGAAGGTGAATCAAGTTTGCAAGTGGCCATGTCGCCTGGTAACCTTAATTGC AGAGGAAGAGATAAAGGATGCCCTTCAATTGATGGGGATTTGGAAGATAAGAAAATCAGAGGTAGGACAGGAGGTGATAGCTTATCAGTTTCCAAGATTT GGCTTTGGTCTAAGAAAAGCAAATTCCCAACGTCTTCAACTACTCACATGGATATGTCTTGTTCTACTTCCCTTGCTGTAAGTTTACCAATCAATGCTAA TAGAACTGGAACTCTAAGAGATATATAA
AA sequence Show only first row Show all	>Potri.015G073600.1 pacid=42776357 polypeptide=Potri.015G073600.1.p locus=Potri.015G073600 ID=Potri.015G073600.1.v4.1 annot-version=v4.1 MCRFLFEVKQKDGFAIYPPPVSPPSSVSSPYNGLNYEKESTPPSSSLNKISPVLLLVIGVLAVIFFVSGLLHLLVRFLLKRASFSPIYHSNRFPETSGSH SIQRQLQQLFRLHDSGLDQAFVDALPVFYYKDIMGSKEPFDCAVCLCEFSGQERLRLLPLCSHAFHIDCIDTWLLSNSTCPLCRGTLLGSSFHMENPLFN FDLSRELSNGFSSEGESGSSNCQKSVTIVEDKGVGEKRVFSVRLGKFKSLNGGEGSGQKQHGETSRSNLDARRCYSLGTVQYVEGESSLQVAMSPGNLNC RGRDKGCPSIDGDLEDKKIRGRTGGDSLSVSKIWLWSKKSKFPTSSTTHMDMSCSTSLAVSLPINANRTGTLRDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40250			RING/U-box superfamily protein...		Potri.015G073600 [exp]	0	1
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	2.23	0.9071
AT5G46240		KAT1	potassium channel in Arabidops...		Potri.004G132200 [exp]	5.19	0.8944	Pt-KAT1.1
AT4G27310	CO		B-box type zinc finger family ...		Potri.013G150500 [exp]	9.48	0.8356
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	9.79	0.8492
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Potri.016G109400 [exp]	9.94	0.8611
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	10.86	0.9009
AT5G67350			unknown protein		Potri.005G145100 [exp]	13.74	0.7187
AT1G01490			Heavy metal transport/detoxifi...		Potri.002G163400 [exp]	14.00	0.8839
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.005G094900 [exp]	15.23	0.8041	HAP5.5
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.017G068748 [exp]	15.81	0.7570

Compare expression of checked genes

Potri.015G073600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.