Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RDR904
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11130 1422 / 0 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT1G14790 773 / 0 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT3G49500 545 / 2e-174 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT2G19930 114 / 1e-25 RNA-dependent RNA polymerase family protein (.1) AT2G19910 98 / 2e-20 RNA-dependent RNA polymerase family protein (.1) AT2G19920 90 / 5e-18 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G135800 [exp] 801 / 0 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G136100 [exp] 800 / 0 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 788 / 0 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G105200 [exp] 783 / 0 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.018G028100 [exp] 578 / 0 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G253500 [exp] 558 / 2e-179 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.007G081300 [exp] 125 / 6e-29 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.006G164400 [exp] 125 / 9e-29 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042134 [exp] 1529 / 0 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10019164 [exp] 781 / 0 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10002361 [exp] 746 / 0 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002910 [exp] 543 / 3e-178 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002017 [exp] 551 / 5e-177 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10034262 [exp] 228 / 3e-66 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10034390 [exp] 97 / 2e-23 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 107 / 4e-23 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1) Lus10034391 [exp] 58 / 6e-10 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [poplar] [flax] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Potri.015G073700.1 pacid=42776600 polypeptide=Potri.015G073700.1.p locus=Potri.015G073700 ID=Potri.015G073700.1.v4.1 annot-version=v4.1 ATGGAAGTGGTAGCAGAGAGACCCTCAGTTCGTGTCACAAACATCCCGCAAACAATCACAGCCAAAGAAATCTTACAGTACCTCGTAGCTCAACTCGGCA AAGATTCAGTCTTTGCCATAGAAATCTCCACGGTAAGGAAAAACTGGAATTCCCGTGGCTTTGGCCGAGTCCAATTTTCTTCCCTCGAGGTTAAACACGA GGCACTCTCTCTCTCTCTAAAGAACAAACTCGTCTTAAAATCCCAGAATCTCAAGTTATCAGAAACCTATGATGACATCATTCCCAGGCCCGTCAAGGAC CAAAATAGAATGGAAAATGGGGTTTTGTATGTGGGTTTTATGAAAAAAGAGACTACATTGTGTGTACTTGAGTATTGGGAAGGTGTGAGAGGGTGGTTTA TGCCTGAGAGGCGGAGGATTGAGTTTTGGATTCGGGTGGGGCAGGAGTTCCGTTATAAGTTAGTGGTGGAGTTTGAGGATATCTTGGAGGCTGTTGGGTA CCCTTTGGATGGTGACAAGGTTAACGCTGTTGTTTTAAAGCTCAGGTATGGACCAAGGATCTATCAAAAAATCTCTGGACCTGGCATAGCTTCGAAATTT AGTACGAATCGGTATTTTTACTGCAAGGAAGACTTTGACTTTCTTTGGGTTCGAACAACAGACATTTCTGCCATAAAATCAATTGGACAGTCAACGTCAT TTTGTTGGGAAATTGGAGAAGGATTAGAGGCTTCAGATACTTTTAGAAATTTCCCATATTATCAAGAAGATATGAACAGACTTGATTTGGAGGATGGGGA AGAATTTTGTTCTGCTTCTGAAACAGTTCCACTCATAAGATGTGGATCAGATAAGTTAGCATATGAGGTCCTTTTCCAGCTGAATTCTCTTGTTCATACT CAAAAAATTAGTCTTGCTGCAGTGGACAGTGATCTGATTAAGATCCTTCGCAATCTGACTGTAAACACCGCTATTATAATTCTTCAGAAATTGCACAAGT TAAAGATGACCTGTTATGATCCCTTGTCTTTTGTAAAACAAAGCCTTAGAGAATCTCTCTCGTCACCACCCAAAAGCTTAACAGAGAATAATATAATGAG TTGTCATAGGGCCTTAATTACACCATCAAAGATTTTTTGTTTGGGTCCTGAGTATGAAACCTCCAACTATGTTGTGAAACACTTTGCTCAATATGCTTCA GACTTTATAAGAGTTACTTTTGTTGAAGAAGATTGGAGTAAACTTCCTGCGAATGCAATTTCAACGAGTATCCAGCGAGGTATTTTTGCAAAACCTTTCA GAACTGGAATATATCATAGAATATTGTCCATTCTTCGAGATGGGTTTGTGATTGGAGCTAAAAGGTTTGAGTTTCTGGCTTTTTCTGCTAGTCAATTGCG ATCCAATTCTGTTTGGATGTTTGCTTCTAACAATGGTGTGAAAGCAGAAGATATTAGAAAATGGATGGGTTGCTTTGACAAGATACGCAGTGTGTCCAAA TGTGCTGCCAGGATGGGTCAGTTGTTCAGTTCTTCTTTGCAAACATTTGTTGTTCCTGTGCAAGATGTAGAGATTATTCCTGACATTGAAGTCACTACTG ATGGCATTGACTACTGCTTTTCTGATGGAATTGGCAAAATTTCTCTTTCTTTCGCCAAGCAAGTTGCTCACAAGTGTGGATTGAGTCATACTCCATCAGC ATTTCAAATTCGGTATGGTGGCTATAAGGGGGTGGTTGCTGTTGACCGTAATTCCTTCCGGAAGCTATCTTTGCGTAGTAGTATGCTAAAATTTGACTCA GAAAACAGGATGCTCAATGTCACTAAATGGAGTGAGTCCATGCCTTGCTATTTGAATCGGGAGATCATTTCTCTCTTGTCTACATTGGGAGTGGCGGATG AAATATTTCAGGCTTTGCAACAGAAACAGTTGTATCGGCTCAGAAAAATGCTAACTAATAAAGAATCAGCTTTAGATGTCTTAGAGAATTTGGCGTGGGC TGATTCCAAGAATATTCTTGTACAAATGTTGCTTCAAGGCTATGAGCCCAATGTGGAACCTTACCTCTCAATGATGCTTCAAGCCTATCATGAAAATTCA TTGATGGAATTAAGAAGCCGATGTCGAATATTTGTCCCGAAGGGTCGCATCCTGATTGGCTGCCTGGATGAAAGTGGTATTTTAGACTATGGACAAGTTT ATGTTCGCATAACCATGACAAAAGCAGAGCTGCAATGTTGCGACCAGAGCTTCTTTCGGAAGGTAGATGAGTCAACATCCACTATAATAGGGGAAGTGGC TGTCACCAAAAATCCTTGTCTTCACCCAGGAGACATTAGAGTCCTTGAAGCAGTCTATGATGTGGAACTGGAGGAGAAGGGCTTGGTGGATTGCATTATC TTCCCCCAGAATGGAGGAAGGCCTCATCCAAATGAATGCTCTGGTGGTGATCTTGATGGGGATCAATTTTTCATAAGCTGGGATGAAGGTCTTCTCCCTT GTCATACTGAAGCCCCAATGGACTACGTTGGAGGGAGACAACGTATAATGGATCACAATGTGACTTTAGAGGAAATTCAGAGATTTTTCGTTGATTATAT GATCAATGACACTTTGGGTGCCATCTCTACTGCCCATTTAGTGCATGCTGACTGTGAACCAGATAAAGCCCGAAGTGAAAAATGTCTGCAGTTGGCAACC CTCCACTCCATGGCAGTTGACTTTGCAAAGACCGGAGCGCCAGCTGAGATGCCCCTGTATTTGAAGCCGAGGGAATTTCCAGATTTCATGGAGAGAGCAG AAAAGCAAATGTACATATCTGATGGGGTATTGGGAAAACTCTATCGAGACATCCATGATTCAACAAGACAAGAAAGGTCAAACTTTATGTGGTCAAAAAA GATTGCTGAAGCAACTTATGATCAAGATCTTGAAGTGAAAGGTTTTGAGGATTTCCTTGGAATTGCATCAATCTATAAGGAGAAGTATATGGAGAAAATG AGCACATTGATGGATTATTATGGGGCTAAAACTGAGGATGAGATACTGACAGGTAATTTGCGACACCGGCCAACTTATTTGCAACGTGACAACAGAAAAT ACGGAGATGTGAAGGATAGAATTCTAGTGTCGCTGAAGAACCTGAAGAAGGAAGCTAAAGAATGGTTTGAGAGCAGCTGCAACCCTACTGAGCACCAGTG CATGGCCTCAGCATGGTATCACGTTACTTACCATCCTACTTATTTCCATGAAAGGATGAATTGCTTGAGCTTTCCATGGATTGTAGGTGACATTTTGTTG AACATAAAGTCTTTGAATAGCAGAAATGCCTGA
AA sequence Show only first row Show all	>Potri.015G073700.1 pacid=42776600 polypeptide=Potri.015G073700.1.p locus=Potri.015G073700 ID=Potri.015G073700.1.v4.1 annot-version=v4.1 MEVVAERPSVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKHEALSLSLKNKLVLKSQNLKLSETYDDIIPRPVKD QNRMENGVLYVGFMKKETTLCVLEYWEGVRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGPRIYQKISGPGIASKF STNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSDKLAYEVLFQLNSLVHT QKISLAAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSLRESLSSPPKSLTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYAS DFIRVTFVEEDWSKLPANAISTSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSK CAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFDS ENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENS LMELRSRCRIFVPKGRILIGCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVDCII FPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHTEAPMDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLAT LHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEKM STLMDYYGAKTEDEILTGNLRHRPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTEHQCMASAWYHVTYHPTYFHERMNCLSFPWIVGDILL NIKSLNSRNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Potri.015G073700 [exp]	0	1	RDR904
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.001G032500 [exp]	2.00	0.7651
AT5G50760			SAUR-like auxin-responsive pro...		Potri.012G102700 [exp]	4.24	0.7438
AT3G15810			Protein of unknown function (D...		Potri.003G032500 [exp]	4.89	0.7347
AT1G13600	bZIP	ATBZIP58	basic leucine-zipper 58 (.1)		Potri.008G113400 [exp]	6.00	0.7411
AT5G01660			unknown protein		Potri.016G127600 [exp]	8.00	0.7309
AT2G37050			Leucine-rich repeat protein ki...		Potri.006G132100 [exp]	8.77	0.7318
AT5G47940			unknown protein		Potri.009G060000 [exp]	9.79	0.7473
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050400 [exp]	10.95	0.7385
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.012G081500 [exp]	16.49	0.7042
AT1G73180			Eukaryotic translation initiat...		Potri.013G126300 [exp]	26.15	0.6749

Compare expression of checked genes

Potri.015G073700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.