Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24450 156 / 8e-49 NFD2 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G078400 [exp] 257 / 1e-88 AT1G24450 193 / 3e-63 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002362 [exp] 139 / 4e-42 AT1G24450 171 / 3e-54 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1) Lus10042133 [exp] 129 / 1e-37 AT1G24450 167 / 4e-52 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [poplar] [flax] RNase_III PF14622 [poplar] [flax] Ribonucleas_3_3 Ribonuclease-III-like
Representative CDS sequence Show only first row Show all	>Potri.015G073900.2 pacid=42775322 polypeptide=Potri.015G073900.2.p locus=Potri.015G073900 ID=Potri.015G073900.2.v4.1 annot-version=v4.1 ATGGCTTGTTCTCGCTTCACTGTCTTTACGCTAGCCGTCTTTTCCATCTTCTCCCTCTCACAGGTTGGAGCTGCAAACAAGCTCAAATCATCGCCATTTG AGTCTGCACTGGACACGCTCTATGCCTTCAAGAACATTGGTTATCTTCGCCGAGCGATGACACACTCATCATTCTCCGAGGAGAACAATAAGGCGTTGAG CATTCTGGGATCAAATGTGATTGACACATCTGTCTCTATGTATTACCTTGGAAAGGACGCTGAGATCTCCTCGAAAGACCTTAACCGCCGGATAGCAGAT AACTCTAAAGTGGACACTTCATGTGCTGTCGATGGGATGAGATTGGGGTTGCACAAGGTGGTTAGAGTTTCTCCCAAAACTAATTCGACGACTCCCTTAG TGGTTTGCAGTGCTTTCAGGGCGTTATTTGGGGCTATTGCTATTGATACTAAGAAGGCTGATGATGCTGGCATTGTGTTTTGGAAGGTTCACGGTCGTGA GGTTGGAAAACCTATGGTTATGTAA
AA sequence Show only first row Show all	>Potri.015G073900.2 pacid=42775322 polypeptide=Potri.015G073900.2.p locus=Potri.015G073900 ID=Potri.015G073900.2.v4.1 annot-version=v4.1 MACSRFTVFTLAVFSIFSLSQVGAANKLKSSPFESALDTLYAFKNIGYLRRAMTHSSFSEENNKALSILGSNVIDTSVSMYYLGKDAEISSKDLNRRIAD NSKVDTSCAVDGMRLGLHKVVRVSPKTNSTTPLVVCSAFRALFGAIAIDTKKADDAGIVFWKVHGREVGKPMVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Potri.015G073900 [exp]	0	1
AT1G56230			Protein of unknown function (D...		Potri.013G013000 [exp]	2.00	0.9042
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Potri.006G184500 [exp]	5.19	0.9047
AT5G61865			unknown protein		Potri.012G108900 [exp]	9.16	0.8944
AT2G38430			unknown protein		Potri.019G029900 [exp]	16.85	0.8427
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	18.43	0.8875
AT1G22970			unknown protein		Potri.010G117100 [exp]	19.26	0.8854
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.018G048600 [exp]	19.97	0.8474	Pt-GPA1.1
AT5G54370			Late embryogenesis abundant (L...		Potri.001G405650 [exp]	20.61	0.8875
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.010G197700 [exp]	21.67	0.8825
AT1G60460			unknown protein		Potri.010G041900 [exp]	22.18	0.8787

Compare expression of checked genes

Potri.015G073900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.