Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50000 654 / 0 Protein kinase superfamily protein (.1) AT3G01490 637 / 0 Protein kinase superfamily protein (.1) AT3G22750 528 / 0 Protein kinase superfamily protein (.1) AT4G14780 509 / 0 Protein kinase superfamily protein (.1) AT3G63260 484 / 8e-172 ATMRK1 Protein kinase superfamily protein (.1.2) AT4G31170 236 / 3e-74 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 223 / 6e-69 Protein kinase superfamily protein (.1) AT2G17700 224 / 5e-68 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT1G62400 217 / 2e-67 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G35780 218 / 2e-65 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079000 [exp] 711 / 0 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 641 / 0 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 631 / 0 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.008G156000 [exp] 536 / 0 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.010G083500 [exp] 532 / 0 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.005G213200 [exp] 521 / 0 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 521 / 0 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 234 / 2e-73 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 234 / 2e-73 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002368 [exp] 670 / 0 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 663 / 0 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10022227 [exp] 615 / 0 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10042622 [exp] 528 / 0 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10039357 [exp] 520 / 0 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10006603 [exp] 509 / 0 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10022076 [exp] 466 / 7e-165 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10030621 [exp] 281 / 1e-91 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10030868 [exp] 254 / 1e-81 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1) Lus10020374 [exp] 225 / 1e-69 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G074400.1 pacid=42775548 polypeptide=Potri.015G074400.1.p locus=Potri.015G074400 ID=Potri.015G074400.1.v4.1 annot-version=v4.1 ATGAAGGATAGCAGTGATGGGTTTGTGAGAGCAGATCAGATTGATCTAAAAAGTCTAGATGAACAATTGGAGAGGCATCTCAATAGAGTGTTAACTCTTG AAAACAAGAACAAGAGAGATGATGATGTTGTTGTTTTTGATGCTGCTAATCTCTCATCTACTCCTTCCAGCACTAAAGTCACCCCTTTCAAGAAGAAGAG GCAGGAATGGGAGATCGACCCTACTCTGCTCGCCATCAAGACTGTCATTGCACGTGGTACCTTTGGCACTGTCCACCGTGGCGTCTATGATAGCCAGGAT GTCGCCGTTAAATTGCTTGACTGGGGTGAAGAGGGTCAAAGGACAGAGGCTGAGATTGCAGCACTAAGGGCAGCTTTTACTCAAGAAGTTGCTGTTTGGC ATAAGCTTGATCATCCCAATGTTACTAAGTTTATAGGGGCGACGATGGGCTTGGCAGATCTGCAAATACAAACCGCAAATGGTCAAATTGGGATGCCAAA TAATATATGTTGTGTAGTTGTGGAATATCTTGCTGGAGGGGCCCTGAAATCTTACCTTATAAAGAACAGGAGAAGAAAGCTAGCTTTCAAAGTTGTTGTT GAGCTGGCACTTGATCTTGCAAGAGGGTTAAATTACCTTCACTCACAGAAGATTGTTCACAGAGATGTAAAGACTGAAAACATGCTATTGGATAAGACAC GGACTGTAAAAATTGCTGACTTTGGTGTTGCTCGTATTGAGGCTTCAAATCCTAATGATATGACTGGGGAAACCGGAACACTCGGATACATGGCTCCTGA GGTTCTCAATGGCAATCCATATAACAGGAAATGTGATGTGTACAGTTTCGGCATCTGTTTATGGGAGATATATTGTTGTGACATGCCTTATTCTGACCTT AGTTTCTCAGAAGTAACTTCAGCTGTGGTCCGCCAGAATCTAAGACCAGAGATACCAAGGTGTTGCCCAAGCTCTCTAGCAAATGTAATGAAGCGTTGCT GGGATGCTAACCCTGACAAGCGCCCTGAGATGGATGAGGTTGTCTCCATGTTGGAGGCCATTGACGTATCAAAAGGTGGGGGCATGATCCCTCCTGATCA ACAGGGTGGTTGTTTTTGCTTCCGCAGGCATCGAGGCCCTTGA
AA sequence Show only first row Show all	>Potri.015G074400.1 pacid=42775548 polypeptide=Potri.015G074400.1.p locus=Potri.015G074400 ID=Potri.015G074400.1.v4.1 annot-version=v4.1 MKDSSDGFVRADQIDLKSLDEQLERHLNRVLTLENKNKRDDDVVVFDAANLSSTPSSTKVTPFKKKRQEWEIDPTLLAIKTVIARGTFGTVHRGVYDSQD VAVKLLDWGEEGQRTEAEIAALRAAFTQEVAVWHKLDHPNVTKFIGATMGLADLQIQTANGQIGMPNNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVV ELALDLARGLNYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARIEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYSDL SFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVSMLEAIDVSKGGGMIPPDQQGGCFCFRRHRGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50000			Protein kinase superfamily pro...		Potri.015G074400 [exp]	0	1
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.019G068400 [exp]	1.00	0.9082
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Potri.001G402400 [exp]	2.00	0.9047	Pt-MLO11.1
AT2G33990		IQD9	IQ-domain 9 (.1)		Potri.011G063200 [exp]	3.87	0.8952
AT3G11590			unknown protein		Potri.016G074300 [exp]	6.32	0.9007
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.016G133800 [exp]	8.06	0.8428
AT1G15530			Concanavalin A-like lectin pro...		Potri.015G083300 [exp]	9.16	0.8360
AT1G76660			unknown protein		Potri.002G001100 [exp]	9.79	0.8925
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.015G063600 [exp]	11.09	0.9023
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	13.07	0.8812
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	13.26	0.8776

Compare expression of checked genes

Potri.015G074400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.