Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27510 582 / 0 Protein of unknown function (DUF3506) (.1) AT4G33630 235 / 6e-68 EX1 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079700 [exp] 995 / 0 AT1G27510 599 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.017G043100 [exp] 366 / 2e-117 AT4G33630 674 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027696 [exp] 771 / 0 AT1G27510 635 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10039967 [exp] 754 / 0 AT1G27510 621 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10042125 [exp] 416 / 3e-138 AT1G27510 358 / 7e-116 Protein of unknown function (DUF3506) (.1) Lus10007064 [exp] 326 / 5e-102 AT4G33630 667 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10020435 [exp] 320 / 1e-99 AT4G33630 655 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10002370 [exp] 169 / 7e-47 AT1G27510 164 / 2e-45 Protein of unknown function (DUF3506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12014 [poplar] [flax] DUF3506 Domain of unknown function (DUF3506)
Representative CDS sequence Show only first row Show all	>Potri.015G075000.1 pacid=42776274 polypeptide=Potri.015G075000.1.p locus=Potri.015G075000 ID=Potri.015G075000.1.v4.1 annot-version=v4.1 ATGATAGTGGGAAATAATGTACATGGAATGGGGCAATCAATAACTACAGTGCCCCAATTGAGACCCTTTTGTTGCATTGATTTCTCAGCCCCAAAATCTA CCAATTTTAGCTTTCTTTTTGGTTGGGGCTGCTCGTCTTCTCCTCACAATAACAAAAAGAATCCTTCTTTCTCTCTCAATAAAACCACCCGCGAGAACTC AAACCTGCACTGCTGTTATTGCTATAATAGCAATAATAATAGTCCTAGTGCTTCTTCTGCTTTGGAGTGGGATTGGAATAGATGGAACCGCCATTTCTCT GAGATTGAACAAGCTGAAAGTTTTGCTTCTCTTCTCAAGTTTCAACTGGAAGATGCAATTGAAAATGAGGACTTCCAAGAGGCTGCAAAGTTGAAAATAG CCATTGCTGAAGCTACGTCAAAGGATAATGTAGCCCAAATAATGTCTCAACTGAAGAATGCAGTAGATGAAGAACGATACCATGATGCTTCAAGATTGTG TAAATATACAGGAAGTGGATTGGTAGGTTGGTGGGTGGGCTACTCATCGGATTCTGATGATCCCTTTGGCAGACTGGTTCGCATAACACCAGATGTGGGC AGATTTGTTGGCCGGAGTTATACTCCAAGGCAGTTGGTCAATTCATCTCCTGGAACTCCATTGTTTGAAATTTTTGTGGTCAAAGATGAAGAAGAAAAGT ATGTTATGCAGGTAGTATGTCTGCAACGAGCTAAAGGAAGTTCAACAAACTCCTCAAGTTCCCCATCCAAATCTGCACAAGTTCCATCCACTTCCAAAGC TGAGAATGCATCTGTAGTGGATGTTCAGGCAAATGATGTTAAGGTAGAGAAAAGTGAGGAGAAGAGCATAAATATTGAAGAAGCAACTGAGGAAGGGATA AAAAGTGTGATAAATTTTCTCAAAGATAAGATTCCAGGGTTGAAAGTAAAAGTCATGAATGTTAATGCTACAGGGGAAGTGATGGAGGATAGTGATTCTG TGAAGCAGTTGATGCAAGAAGATGGTGATAAAACAGGTTCCAGTGAAAATTCAGAAGATGATGCCAGTAATTTAGAAGAGATACAGCCTGATGAGGATGC TTTGGAAGGCACTAATGATTCGTCAAAGGATGGAAAGGATTTAGACACGAAGCTTTTTATTGGTGGGGTTGTGCATAACAATGAAGATACACCAAGCAAG GATGAGAATGTGCGTCTTCCAGCTGAAATTAAAAATATAGAGAAAGATTCTTTTACACTACATTTTCAAGGAAGTCTAGATTCTGGCAGTAAAGAAAGTA AAGCATCCAAGGCAAAAGTGGCATCTTTAGCAGCCAAAGGTGTTTCTGAGCTTATGCCTTCAGATATTGCCAAGGCATTTTGGGGTGCTGACAAAGTTTC TTCAAAGGTTTCTAGAAATGTCCGTGAAATAGTCAAACTTGCTGTTAGTCAGGCACAGAAGCAAAGCAGTTTATCTGAGTATACAACTTTCAGTAGAATT ACAACTTCTAATAGCAGTTTAGATCCATTTGATGGCCTGTATGTTGGTGCATTTGGACCTTATGGGACTGAGATAGTGCAATTGAAGCGTAAATATGGTC ATTGGAATAATGGAGATGACCAGTCATCAGATGTGGAGTTCTTTGAGTATGTTGAGGCAGTGAAGCTAACTGGGGATCTTAATGTCCCCGCTGGCCAGGT CACATTTCGTGCTAGAATTGAGAAGGGAAGACGCAATTCCAACCGCGGGATGTATCCAGATGAATTGGGAGTGGTGGCAAGCTACAAAGGTCAAGGAAGA ATAGCAGAGTTTGGCTTCAAGAATCCACAATGGGTTGATGGTGAACTTCTTCAACTTAATGGCAGGGGCATCGGACCATATGTCAAAGGGGCAGATCTTG GTTTCCTTTATGTCGTTCCTGAACAAAGTTTCCTTGTGCTGTTTAACCGGTTGAAACTACCAGACTAA
AA sequence Show only first row Show all	>Potri.015G075000.1 pacid=42776274 polypeptide=Potri.015G075000.1.p locus=Potri.015G075000 ID=Potri.015G075000.1.v4.1 annot-version=v4.1 MIVGNNVHGMGQSITTVPQLRPFCCIDFSAPKSTNFSFLFGWGCSSSPHNNKKNPSFSLNKTTRENSNLHCCYCYNSNNNSPSASSALEWDWNRWNRHFS EIEQAESFASLLKFQLEDAIENEDFQEAAKLKIAIAEATSKDNVAQIMSQLKNAVDEERYHDASRLCKYTGSGLVGWWVGYSSDSDDPFGRLVRITPDVG RFVGRSYTPRQLVNSSPGTPLFEIFVVKDEEEKYVMQVVCLQRAKGSSTNSSSSPSKSAQVPSTSKAENASVVDVQANDVKVEKSEEKSINIEEATEEGI KSVINFLKDKIPGLKVKVMNVNATGEVMEDSDSVKQLMQEDGDKTGSSENSEDDASNLEEIQPDEDALEGTNDSSKDGKDLDTKLFIGGVVHNNEDTPSK DENVRLPAEIKNIEKDSFTLHFQGSLDSGSKESKASKAKVASLAAKGVSELMPSDIAKAFWGADKVSSKVSRNVREIVKLAVSQAQKQSSLSEYTTFSRI TTSNSSLDPFDGLYVGAFGPYGTEIVQLKRKYGHWNNGDDQSSDVEFFEYVEAVKLTGDLNVPAGQVTFRARIEKGRRNSNRGMYPDELGVVASYKGQGR IAEFGFKNPQWVDGELLQLNGRGIGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27510			Protein of unknown function (D...		Potri.015G075000 [exp]	0	1
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	1.41	0.9802
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Potri.017G148700 [exp]	2.44	0.9695
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Potri.019G034000 [exp]	3.00	0.9762
AT1G51100			unknown protein		Potri.011G132900 [exp]	3.16	0.9728
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	3.46	0.9733
AT5G22340			unknown protein		Potri.009G160500 [exp]	4.89	0.9653
					Potri.001G033500 [exp]	5.38	0.9473
AT2G35130			Tetratricopeptide repeat (TPR)...		Potri.012G123600 [exp]	6.00	0.9618
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	6.70	0.9652
AT1G35420			alpha/beta-Hydrolases superfam...		Potri.019G079000 [exp]	8.36	0.9694

Compare expression of checked genes

Potri.015G075000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.