Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36330 247 / 2e-81 Uncharacterised protein family (UPF0497) (.1) AT5G62820 231 / 9e-75 Uncharacterised protein family (UPF0497) (.1) AT5G40300 175 / 2e-53 Uncharacterised protein family (UPF0497) (.1) AT4G11655 70 / 4e-14 Uncharacterised protein family (UPF0497) (.1) AT2G38480 67 / 4e-13 Uncharacterised protein family (UPF0497) (.1) AT2G39530 44 / 3e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079800 [exp] 385 / 1e-135 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1) Potri.016G128200 [exp] 88 / 6e-21 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1) Potri.001G102600 [exp] 57 / 9e-10 AT4G11655 105 / 2e-28 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042123 [exp] 271 / 2e-90 AT2G36330 228 / 2e-73 Uncharacterised protein family (UPF0497) (.1) Lus10002372 [exp] 271 / 4e-90 AT2G36330 224 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Lus10014537 [exp] 154 / 6e-42 AT3G16180 174 / 4e-49 Major facilitator superfamily protein (.1) Lus10001266 [exp] 77 / 1e-16 AT2G38480 168 / 8e-53 Uncharacterised protein family (UPF0497) (.1) Lus10032148 [exp] 76 / 1e-15 AT2G36330 82 / 7e-18 Uncharacterised protein family (UPF0497) (.1) Lus10012216 [exp] 74 / 3e-15 AT2G38480 170 / 2e-53 Uncharacterised protein family (UPF0497) (.1) Lus10032147 [exp] 70 / 7e-15 AT2G36330 89 / 2e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031303 [exp] 45 / 2e-05 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1) Lus10005154 [exp] 40 / 0.0007 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.015G075100.1 pacid=42775610 polypeptide=Potri.015G075100.1.p locus=Potri.015G075100 ID=Potri.015G075100.1.v4.1 annot-version=v4.1 ATGGAAACAATGAAGTCCAATTGGAAATCGAAGAAAATTCAATTACCAATTCGACGATCCTCCTCTTCAAACTCCGAGTCACTATCGCACTTCGAATCAC CTATCTCCCCTCTCCGTTACGACTCCCCTCTCCGATCCGACCTAGGCGACCCTCCCGAATCCCCTCCCTATGTCTCTCCCAGCGCTTCACCCGAGAAACC ACAACCTCCGCTCCAGAAATCCGTTGCTGTCACCGACAAGTCTACTCAGTACTCCCCCGCACTTTCCCCTATCCCGCCGGATAACCTGGCGGCGCCTCCG CAGGGGATGCCGGCGGTGGTGCTGAACAGGGCGGTGAGGGAGCAGGGACCGGCTGCGGGAGTGAAGCAGGTGGGGCCGGAGGGGAGGTCGACGGCCTCGG TGATGAGGGGGTCGAGGAAAGAAGAGAAGATGAAGATTGGTGAGTTAGGATTTAGGGTTAGTGAGATTGTTTTGTGTTTGATATCTTTTTCTGTTATGGC TGCTGATAAGACTAAAGGATGGAGTGGTGATTCCTTCGATAGATATAAAGAGTACAGGTATTGTTTGGCTGTGAATGTGATTGGGTTTGCGTATGCTGGA TTCCAAGCTTATGATTTAATCTATCACATAGCCACAGGGAAACATGTGATTCGACACCATCTTCGTCATCACTTCAACTTATTCATGGATCAGATACTAG CATATCTTCTGGTATCAGCATCATCATCATCAGCCACTCGGGTTGATGACTGGCAATCTAACTGGGGCAAAGATGAATTCACAAAGATGGCAACTGTTTC GGTTGTCATGGCCTTCCTGGCTTTTATTGCCTATGCTGGTAGCTCCCTTATCTCCGGTTATAATTTATATAACCGCGATGGGCTTTGA
AA sequence Show only first row Show all	>Potri.015G075100.1 pacid=42775610 polypeptide=Potri.015G075100.1.p locus=Potri.015G075100 ID=Potri.015G075100.1.v4.1 annot-version=v4.1 METMKSNWKSKKIQLPIRRSSSSNSESLSHFESPISPLRYDSPLRSDLGDPPESPPYVSPSASPEKPQPPLQKSVAVTDKSTQYSPALSPIPPDNLAAPP QGMPAVVLNRAVREQGPAAGVKQVGPEGRSTASVMRGSRKEEKMKIGELGFRVSEIVLCLISFSVMAADKTKGWSGDSFDRYKEYRYCLAVNVIGFAYAG FQAYDLIYHIATGKHVIRHHLRHHFNLFMDQILAYLLVSASSSSATRVDDWQSNWGKDEFTKMATVSVVMAFLAFIAYAGSSLISGYNLYNRDGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36330			Uncharacterised protein family...		Potri.015G075100 [exp]	0	1
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.006G000800 [exp]	4.24	0.7497
AT2G11890			adenylate cyclases (.1.2)		Potri.006G062000 [exp]	6.00	0.7242
AT4G19670			RING/U-box superfamily protein...		Potri.015G117600 [exp]	6.92	0.7266
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.002G094600 [exp]	7.93	0.7416
AT4G19190			zinc knuckle (CCHC-type) famil...		Potri.004G236300 [exp]	8.48	0.7276
AT4G10810			unknown protein		Potri.003G143800 [exp]	22.22	0.6834
AT4G28240			Wound-responsive family protei...		Potri.013G147700 [exp]	24.73	0.6716
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.002G176300 [exp]	25.07	0.7037	Pt-ATHB.4
AT3G14830			unknown protein		Potri.003G026500 [exp]	26.45	0.6926
AT3G49730			Tetratricopeptide repeat (TPR)...		Potri.002G176100 [exp]	26.72	0.7003

Compare expression of checked genes

Potri.015G075100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.