Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14740 302 / 6e-104 BETACA2, CA18, CA2 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) AT3G01500 292 / 1e-99 SABP3, ATBCA1, CA1, ATSABP3 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) AT1G70410 266 / 1e-89 ATBCA4 beta carbonic anhydrase 4 (.1.2.3) AT1G23730 254 / 6e-85 ATBCA3 BETA CARBONIC ANHYDRASE 3, beta carbonic anhydrase 3 (.1) AT4G33580 187 / 5e-58 ATBCA5 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) AT1G58180 163 / 2e-49 ATBCA6 A. THALIANA BETA CARBONIC ANHYDRASE 6, beta carbonic anhydrase 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G075902 [exp] 528 / 0 AT5G14740 304 / 1e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.010G041100 [exp] 299 / 3e-102 AT5G14740 392 / 4e-138 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.008G189800 [exp] 293 / 3e-100 AT5G14740 375 / 5e-133 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.001G348900 [exp] 290 / 5e-98 AT3G01500 429 / 2e-151 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Potri.017G044700 [exp] 197 / 1e-61 AT4G33580 339 / 8e-117 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.007G114600 [exp] 196 / 3e-61 AT4G33580 335 / 4e-115 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.005G156600 [exp] 194 / 2e-60 AT4G33580 303 / 1e-102 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030614 [exp] 278 / 3e-94 AT1G70410 351 / 6e-123 beta carbonic anhydrase 4 (.1.2.3) Lus10022235 [exp] 280 / 6e-94 AT3G01500 460 / 3e-163 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10030874 [exp] 258 / 2e-86 AT5G14740 319 / 8e-111 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10016443 [exp] 238 / 1e-77 AT5G14740 298 / 4e-101 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10008780 [exp] 199 / 6e-62 AT3G01500 357 / 1e-122 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10009274 [exp] 185 / 2e-57 AT4G33580 281 / 2e-94 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10015833 [exp] 174 / 3e-52 AT4G33580 306 / 2e-103 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10020415 [exp] 171 / 2e-49 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10015892 [exp] 124 / 5e-34 AT4G33580 205 / 3e-65 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00484 [poplar] [flax] Pro_CA Carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Potri.015G076000.1 pacid=42776529 polypeptide=Potri.015G076000.1.p locus=Potri.015G076000 ID=Potri.015G076000.1.v4.1 annot-version=v4.1 ATGAGTAATCTGTCACATGAAGGGGCTATTGAAGGATCGAAGAAGCTTCTAATTGATAATGAAAAGGATGACCAGTTGAACAAGGAGGTTGAGGCAAAAA TTGAGAAGCTGATAGGTGAGTTGCAAGGGAAAAGGCTCCCTGATCACTGTGATCCAGTTGGAAGAATTCTGGAGGGGTTTCATCGCTTCAAGACCACTAA ATTTGACAAGTATCCAGAGTTGTACCGTGAACTTGCAGAAGGCCAGTCCCCCAAGTTTCTGGTTTTCGCATGCTCTGATTCCCGGGTTAGCCCTTCTCAT GTCCTGGACTTCCAACCTGGTGAAGCCTTCATGGTCCGCAACATCGCTAACCTGGTTCCTGCATTTAACCAGTTGAGATACTCTGGAGTTGGAGCAACTA TTGAATATGCTGTGGCGACTTTGGGGGTAGAAAATATCTTGGTCATTGGACATAGTCGCTGTGGTGGGATAGAGAGGCTTATGACTCTCCCAGAGGATGG TTCGACTGCTAATGACTTCGTAGATGATTGGGTCAAAATCGGTTTACCTGCCAAGGCCAAGGTCGAAGCTGAGTTTGGGCATCTTCCACTTCCTGAACAG ATCCATAAATGTGAAAAGGAGGCTGTGAATTTATCACTGATAAACTTACAGACATACCCATATGTTCAAGAAAGGATGGCAGAGGGAGCTCTAGCACTGA GGGGTGGCTATTATGATTTTGTTAAAGGGTGTTTCGAGCTCTGGGAGGTCAAGTCCACCGTTACGCCGCCCATCTCCACGTGTTGCAAATAG
AA sequence Show only first row Show all	>Potri.015G076000.1 pacid=42776529 polypeptide=Potri.015G076000.1.p locus=Potri.015G076000 ID=Potri.015G076000.1.v4.1 annot-version=v4.1 MSNLSHEGAIEGSKKLLIDNEKDDQLNKEVEAKIEKLIGELQGKRLPDHCDPVGRILEGFHRFKTTKFDKYPELYRELAEGQSPKFLVFACSDSRVSPSH VLDFQPGEAFMVRNIANLVPAFNQLRYSGVGATIEYAVATLGVENILVIGHSRCGGIERLMTLPEDGSTANDFVDDWVKIGLPAKAKVEAEFGHLPLPEQ IHKCEKEAVNLSLINLQTYPYVQERMAEGALALRGGYYDFVKGCFELWEVKSTVTPPISTCCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Potri.015G076000 [exp]	0	1	Pt-CA1.1
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Potri.015G075902 [exp]	1.41	0.9995
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	11.09	0.9867
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.005G022000 [exp]	13.22	0.9845
					Potri.008G174050 [exp]	14.42	0.9233
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101200 [exp]	16.43	0.9844
					Potri.003G184601 [exp]	17.23	0.9781
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	17.74	0.9842
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101100 [exp]	19.18	0.9840
					Potri.007G014501 [exp]	20.34	0.9835
					Potri.017G101650 [exp]	21.56	0.9313

Compare expression of checked genes

Potri.015G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.