Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62810 317 / 3e-102 ATPEX14, PED2, PEX14 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G080800 [exp] 673 / 0 AT5G62810 330 / 3e-107 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027672 [exp] 374 / 5e-124 AT5G62810 381 / 3e-127 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10039936 [exp] 191 / 7e-57 AT5G62810 208 / 3e-64 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10002377 [exp] 162 / 1e-45 AT5G62810 199 / 5e-60 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10042119 [exp] 156 / 4e-42 AT5G62810 191 / 2e-55 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10002378 [exp] 116 / 3e-29 AT5G62810 115 / 2e-29 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10039935 [exp] 84 / 9e-19 AT5G62810 64 / 2e-12 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04695 [poplar] [flax] Pex14_N Pex14 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G076100.1 pacid=42774960 polypeptide=Potri.015G076100.1.p locus=Potri.015G076100 ID=Potri.015G076100.1.v4.1 annot-version=v4.1 ATGGCGACTCAATCATCGGAACCTTCTCCTGCAAATCCTGCCCATCAAAACCCAGAGAATGTACAGCCATCAACTGGGGTTCAGCAGGGTGCTGGGGCTG AGGCTATCAAGCAAAGTCCTCCATCTGTCTTTGTGAACTCAGAACCTATGCGAGAGGAACAAGTGCAGAATGCTGTGAAGTTTCTTTCGCACCCAAAAGT TAGGGGCTCTCCTGTTATGTATAGAAGATCGTTTCTTGAGAAGAAGGGCCTCACTAAGGAAGAGATAGATGAAGCTTTTCGGCGTGTGCCGGACCCAACC CCAAGCACACAGGCAACCAGTTCTAGTCAAGTAGAGGGTCAGGTGATATCAACACCAAATGTTCAGCCACCAGCCCCAGCACAAACCCTGCAACCTGTAG CAGCTGCTCCTACTGGTGTCATTTCTACAATGAGGACTTTGACTCAACATCAATTTAACTGGCATCATGCTGTTGCTGCTGTAGGACTGCTGGCAGTTTC AGGTGCTGGAACAGCTGTGTTAGTTAAGAAAACTATTATTCCCAGGCTGAAGTCTTGGATACGCAAGGTTGTGTTGGAAGAAGAAGATGACAGCGTGATG AAAACTAATACAAAGCTAAGTTTGGCAGAAGAAGCAGCGGCAGCTGCCAAAGCAGCAGCAGCTGCAGCGGCTGATGTTGCACGAGCGAGCCAGGAAATGT TGAATTCGAAAAATGAAGAGAAGATATGCTTCAAGGAATTTATGAATATGTTAGATGTGCAAGTACAGGAAATGAAGTCAATGAGTACTGCTATACATAG ATTGGAAGGACAAACAGATTACCGTGTGAGAAACTCTCTTGCTGATCAAGAAGATTATAGAGCCTCAGTGGCAAATCCAAAGCAAACATTTACCAATGGC AAGGCAGAGTTTGATTTGCGTTCAGGGAGATCTTCATCACAGCCCATGTCTGCTCAAGCCTCTGTTGCAGCACACCCAAAGTCATTTATGGAGATCATGG ACCAGAGAGGGGAGAAACCTGCCAATATCAGAGATATCAATGATCAACCACCCAACCCTTACCAGCAAATTTCAAATCCTCGCATAGCATCTAGAACGAA GCCCTGGGAGGTTGGTCGAGCTCAAAACAACTCAAGCCAAGTGCTTGAGTCTCAAGCGGGCAGAGAAGGTTTGAATTCCAATGTACAAGACAGTGGTGTC GATCAGTTAGATGGCGAGAGCACTGAACCCTGGTGGCAGCAGAAAAATGCCAGAATCACAGAGATAGAAAATGGAGATGAAATAAAAGCTGGACCTTTTG GTGCACAAACCAGCGAGCAACCAGTTAGGCGTGCATGGGTCCCTCCACAGCCACCCCCTGTCGTGATGCCTGAAGCAGCTGAAGCCATCAGACGACCAAA ACAATCAATTCAGAAAGAACAGTCAGAAGATGATCAATCTGTGTCTCATCCAATAGACACAGCTGATGAGCTACAGAGGATAACAAAAATATCAGAATCA GGAGGTGCAGTGGAGATTAATGGTGGGGGGTCAGTGCTGAACTCAAGTGAGATACAGGAGGAGCAAGAACAAATCCATGAGAACTAG
AA sequence Show only first row Show all	>Potri.015G076100.1 pacid=42774960 polypeptide=Potri.015G076100.1.p locus=Potri.015G076100 ID=Potri.015G076100.1.v4.1 annot-version=v4.1 MATQSSEPSPANPAHQNPENVQPSTGVQQGAGAEAIKQSPPSVFVNSEPMREEQVQNAVKFLSHPKVRGSPVMYRRSFLEKKGLTKEEIDEAFRRVPDPT PSTQATSSSQVEGQVISTPNVQPPAPAQTLQPVAAAPTGVISTMRTLTQHQFNWHHAVAAVGLLAVSGAGTAVLVKKTIIPRLKSWIRKVVLEEEDDSVM KTNTKLSLAEEAAAAAKAAAAAAADVARASQEMLNSKNEEKICFKEFMNMLDVQVQEMKSMSTAIHRLEGQTDYRVRNSLADQEDYRASVANPKQTFTNG KAEFDLRSGRSSSQPMSAQASVAAHPKSFMEIMDQRGEKPANIRDINDQPPNPYQQISNPRIASRTKPWEVGRAQNNSSQVLESQAGREGLNSNVQDSGV DQLDGESTEPWWQQKNARITEIENGDEIKAGPFGAQTSEQPVRRAWVPPQPPPVVMPEAAEAIRRPKQSIQKEQSEDDQSVSHPIDTADELQRITKISES GGAVEINGGGSVLNSSEIQEEQEQIHEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.015G076100 [exp]	0	1
AT5G54930			AT hook motif-containing prote...		Potri.011G138700 [exp]	2.00	0.8958
AT1G55000			peptidoglycan-binding LysM dom...		Potri.005G032100 [exp]	11.31	0.8768
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.008G150100 [exp]	12.00	0.8268
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Potri.005G070500 [exp]	13.03	0.8321
AT2G33680			Tetratricopeptide repeat (TPR)...		Potri.013G006800 [exp]	16.97	0.8436
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	18.73	0.8355
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041400 [exp]	20.32	0.8447
AT5G62650			Tic22-like family protein (.1)		Potri.004G072100 [exp]	20.85	0.8623
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.018G000800 [exp]	21.72	0.8438
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	23.66	0.8326

Compare expression of checked genes

Potri.015G076100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.