Plant FIBer expression Database

DXR.2 (Potri.015G076200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol DXR.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62790 813 / 0 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G080900
[exp]
923 / 0 AT5G62790 828 / 0.0 PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002379
[exp]
827 / 0 AT5G62790 791 / 0.0 PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
Lus10042118
[exp]
827 / 0 AT5G62790 787 / 0.0 PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase
CL0139 GADPH_aa-bio_dh PF08436 DXP_redisom_C 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
CL0063 NADP_Rossmann PF13288 DXPR_C DXP reductoisomerase C-terminal domain
Representative CDS sequence
>Potri.015G076200.1 pacid=42776364 polypeptide=Potri.015G076200.1.p locus=Potri.015G076200 ID=Potri.015G076200.1.v4.1 annot-version=v4.1
ATGGCACTTAATTTTCTTTCTCCAGCTGAAATCAAGGCTATCTCTTTCTTGGATTCTACTAAATCCAATCACATACCTAAGCTTCCAGGTAGGCTTGGTT
TGAAGAGGAAGGATTGTCGAGGGAGAAGAATTCAATGTTCTGTTCAGAATCAGAATCAGCCACCTCCAGCTTGGCCAGGAAGAGCGTTTCCAGAACCTGG
ACGCAAGACCTGGGATGGTCCTAAGCCTATATCAATTGTTGGATCTACTGGTTCCATTGGAACTCAGACATTGGACATAGTAACAGAGAATCCAGATAAA
TTCACAGTCGTGGCACTGGCAGCTGGTTCAAATGTTACTCTTCTTGCTGATCAGGTGAGGAGATTCAAACCTCAACTAGTTGCTGTTAGAAATGAGTCAT
TAGTTGATGAACTCAAAGAGGCTCTGGCTGATGTCGAGGAAAAGCCTGAGATTATTCCTGGGGAGCAAGGAGTTATCGAGGTTGCTCGTCATCCAGATGC
TGTCAGTGTAGTTACAGGAATAGTAGGTTGTGCAGGCCTAAAGCCTACGGTTGCTGCGATAGAAGCAGGAAAAGACATATGCTTGGCCAATAAAGAGACA
CTAATTGCTGGAGGTCCTTTTGTCCTCCCTCTTGCTCACAAACATAACGTAAAAATTCTTCCAGCTGATTCTGAACATTCTGCCATTTTTCAGTGTATTC
AGGGCCTGCCTGAGGGTGCATTGCGGCGCATCATTTTAACTGCTTCTGGTGGGGCTTTCAGGGATTGGCCTGTTGAAAAATTGAAAGAAGTTAAAGTAGC
TGATGCTTTGAAGCATCCCAACTGGAGTATGGGTAAAAAGATTACTGTAGACTCTGCTACCCTTTTCAACAAGGGTTTAGAAGTCATTGAAGCCCACTAT
TTGTTTGGAGCCGATTATGATAATATTGATATCGTAATTCATCCACAGTCTATAATACATTCAATGATTGAAACACAGGATTCATCTGTTCTTGCACAAT
TGGGGTGGCCTGATATGCGCTTGCCTATCCTTTACACCTTGTCATGGCCAGAGAGAGTTTACTGTTCTGAAATTACTTGGCCTCGCCTTGATCTTTGCAA
GCTTGGATCACTAACTTTTAAAGCTCCCGACAATGTAAAATACCCATCTATGGATCTTGCCTATACTGCTGGACGGGCTGGAGGCACCATGACAGGAGTC
CTCAGTGCTGCTAACGAGAAAGCTGTAGAAATGTTCATTGATGAAAAGATAAGCTATCTTGACATTTTCAAGGTTGTGGAGCTAACATGTGATAAGCACC
AAGCAGAATTTGTGGCCTCACCCTCTCTGGAGGAAATTATACATTATGACTTGTGGGCGCGAGAATTTGCTGCTAGCTTGCAACACTCTTCCGGTCCAAG
TCCTGTTCTTGCTTGA
AA sequence
>Potri.015G076200.1 pacid=42776364 polypeptide=Potri.015G076200.1.p locus=Potri.015G076200 ID=Potri.015G076200.1.v4.1 annot-version=v4.1
MALNFLSPAEIKAISFLDSTKSNHIPKLPGRLGLKRKDCRGRRIQCSVQNQNQPPPAWPGRAFPEPGRKTWDGPKPISIVGSTGSIGTQTLDIVTENPDK
FTVVALAAGSNVTLLADQVRRFKPQLVAVRNESLVDELKEALADVEEKPEIIPGEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDICLANKET
LIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHY
LFGADYDNIDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPERVYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMDLAYTAGRAGGTMTGV
LSAANEKAVEMFIDEKISYLDIFKVVELTCDKHQAEFVASPSLEEIIHYDLWAREFAASLQHSSGPSPVLA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62790 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, ... Potri.015G076200
[exp]
0 1 DXR.2
AT2G22870 EMB2001 embryo defective 2001, P-loop ... Potri.007G006300
[exp]
10.00 0.8816
Potri.004G212550
[exp]
14.17 0.8489
AT1G06920 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAM... Potri.006G107700
[exp]
19.00 0.8303
AT3G48480 Cysteine proteinases superfami... Potri.010G180300
[exp]
25.23 0.8403
AT5G45920 SGNH hydrolase-type esterase s... Potri.004G053800
[exp]
29.79 0.8350
AT5G55960 unknown protein Potri.001G370500
[exp]
48.00 0.7957
AT2G42040 unknown protein Potri.006G193300
[exp]
48.06 0.8278
AT2G31400 GUN1 genomes uncoupled 1 (.1) Potri.002G193900
[exp]
52.53 0.8246
AT2G32950 FUS1, EMB168, D... FUSCA 1, EMBRYO DEFECTIVE 168,... Potri.014G159300
[exp]
58.99 0.7921 COP1.1
AT3G60340 alpha/beta-Hydrolases superfam... Potri.002G137200
[exp]
78.46 0.8069

Potri.015G076200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.