Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32180 1469 / 0 ATPANK2 pantothenate kinase 2 (.1.2.3) AT1G60440 402 / 3e-132 ATCOAA, ATPANK1 pantothenate kinase 1 (.1) AT4G35360 189 / 6e-53 Uncharacterised conserved protein (UCP030210) (.1) AT2G17340 186 / 1e-51 Uncharacterised conserved protein (UCP030210) (.1) AT2G17320 183 / 7e-51 Uncharacterised conserved protein (UCP030210) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081600 [exp] 1706 / 0 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3) Potri.010G041800 [exp] 508 / 6e-173 AT4G32180 516 / 2e-178 pantothenate kinase 2 (.1.2.3) Potri.008G189500 [exp] 492 / 1e-166 AT4G32180 504 / 7e-174 pantothenate kinase 2 (.1.2.3) Potri.004G207700 [exp] 177 / 1e-48 AT4G35360 580 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Potri.009G169000 [exp] 171 / 1e-46 AT4G35360 595 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009520 [exp] 1533 / 0 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3) Lus10020341 [exp] 1370 / 0 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3) Lus10029146 [exp] 473 / 3e-159 AT4G32180 500 / 7e-172 pantothenate kinase 2 (.1.2.3) Lus10013019 [exp] 471 / 2e-158 AT4G32180 503 / 3e-173 pantothenate kinase 2 (.1.2.3) Lus10013846 [exp] 168 / 3e-45 AT4G35360 619 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Lus10026563 [exp] 152 / 1e-39 AT4G35360 555 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01937 [poplar] [flax] DUF89 Protein of unknown function DUF89 CL0108 [poplar] [flax] Actin_ATPase PF03630 [poplar] [flax] Fumble Fumble
Representative CDS sequence Show only first row Show all	>Potri.015G077300.10 pacid=42774931 polypeptide=Potri.015G077300.10.p locus=Potri.015G077300 ID=Potri.015G077300.10.v4.1 annot-version=v4.1 ATGGCGGGTTTAAAAGAGGACCCAATTCTTGGAATTGACGGTATCACAATAAAGGAGGAGCTTGAGATTGGTAAGCCTGAGATTGACAGGTCGAGAGAGG ACCACCCAGTTCTTGAAACTGGCGGTGCAGTAATAAAAGGGGAGTCTTTGATCAACAACAGGTCTGTTATTGACAAGGTGAGAGAGGAGGGGAGCTGTGG TCAAGGTGAGAGAGACATGGTTCCTCCCATTAGCAATTCTATTCACAGGTCAGGTTCCAGACCACAGCTTGACCTTAGCAAGGCTGCAATTGAAGGGACC TTTGAGGAGAGAGATCCTACAATTCTGTTGCCTAATCAATCTGATGATATATCACATTTGGCTCTTGATATTGGAGGTTCGCTAATCAAGTTGGTGTATT TTTCAAGACACCAAGACCGACCAACTAATGATAAGAGGAAGAAGACAGGGAAGGAAAGATTTGGAATTGCCAATGGTTATAGGAGAAGCTACCCCATTCT TGGAGGGAGACTTCATTTTGTCAAGTTTGAGACAAGCAAGATCAATGAATGCTTAGATTTTATTTCTTCCAAGCAGCTTCACTGTGGTGGCATGGATTCA CATAGTTGGCATTCTGAGACCTCACCCAATGGCAATGCTGTAATTAAGGCCACTGGCGGCGGGGCATACAAGTTTGCAGACCTCTTCAAGGAAAGGCTTG GGGTTAGTCTTGACAAGGAAGATGAGATGGATTGTCTTGTGGCAGGAGCCAACTTTTTGCTTAAGGCTATTCGCCATGAAGCTTTCACACACATGGAGGG CCAGAAAGAGTTTGTGCAGATTGATCAGAATGATCTGTTCCCTTATCTTCTTGTTAACATTGGATCTGGTGTTAGTATGATCAAGGTTGATGGGGATGGG AAGTTTGAACGAGTCAGTGGCACAAATGTTGGTGGTGGTACTTACTGGGGCTTGGGAAGGCTGTTAACCAAGTGCAAGAGTTTCGATGAGTTGCTAGAGC TGAGTCAAAGGGGTGATAATAGAACAATTGATATGCTGGTCGGTGATATTTATGGTGGTATGGATTATAATAAGATTGGTCTCTCAGCATCAACCATCGC TTCTAGTTTTGGCAAGACTATATCTGAAAAGAAGGAACTCGCAGACTACAGACCTGAAGATATTTCCCTGTCCCTCTTGCGAATGATTTCATATAACATT GGGCAGATTTCATACCTGAATGCACTTCGATTTGGGCTTAAACGAATCTTCTTTGGAGGGTTTTTTATTAGGGGTCATGCATATACAATGGATACAATTT CCTTTGCTGTTCATTTCTGGTCAAAAGGAGAGGCACAGGCAATGTTTTTGCGGCATGAAGGGTTTCTGGGAGCTTTAGGAGCATTTATGAGCTATGAAAA GCATGGTCTTGATGACTTGATGGTCCATCAGTTAGTTGAAAGGTTCCCTATGGGTGCACCATATACTGGAGGAAAGATTCATGGGCCACCACTCGGGGAT TTGAATGAGAAGATTTCATGGATGGAAAAGTTTGTGCAGAAGGGAACCGAGATTACTGCACCTGTACCAATGGATCCACCTGGAACCACAGGGCTTGGTG GGTTTGAAGTTCCTTCATCCAAAGGTGGTACTCTACGTTCTGATGCCAGTGCATTAAACGTTGGTGTTCTGCATCTTGTACCCACACTGGAGGTGTTTTC ACAGTTGGCAGACCCAAAAATGTACGAGCCTAACACTATCGACCTTTCAGATCACAATGAATTAGAGTATTGGTTCACTGTGCTGTCCGAGCATTTGTCA GATCTTGTTGATAAGGCAGTGGCTAGTGAAGGTGGAACAGATGATGCTAAAAGAAGAGGTGATGCTTTTGCTCGTGCATTTTCTGCTCACTTGGCAAGGT TAATGGAGGAGCCTGCAGCATATGGGAAGTTAGGATTGGCCAATCTTTTGGAACTAAGGGAAGAGTGCTTGAGAGAATTCCAATTCGTTGACGTCTACAG AAGCATAAAACAAAGGGAAAATGAGGCATCACTTGCTGTGTTACCTGACCTGTTGGCGGAGCTTGATAGCATGACAGAGGAGACAAGATTGCTTACATTA ATTGAAGGTGTTCTAGCTGCAAACATATTTGACTGGGGATCTCGTGCTTGTGTGGAACTCTATCATAAAGGAACAATTATAGAAATCTATAGAATGAGTC GCAATAAAATGCAAAGACCTTGGCGGGTGGATGACTTTGATGTATTCAAAGAAAGAATGTTGGGGTCTGGAGATAAGAAGCCTCGCCCCCATAAGCGAGC TTTACTTTTTGTGGACAACTCAGGTGCTGATGTTGTTTTAGGGATGCTTCCCCTAGCACGGGAGCTCCTCCAACGTGGAACTGAGGTTGTTTTGGTTGCG AACTCCCTTCCTGCACTAAATGATGTAACTGCTATGGAGCTTCCTGACATTGTAGCTGAGGCTGCAAAGCATTGTGACATTCTTCGCAGAGCTGCTGAAG CAGGTGGCCTACTTGTTGATGCAATGATAAACACTTCAGATGGTTCTAAAGAGAATTCCTCCTCGGTCCCCTTGATGGTTGTTGAGAATGGGTGTGGGAG TCCATGCATAGATTTGAGGCAGGTCAGCTCTGAGCTCGCTGCTGCTGCAAAGGATGCTGATTTGATTATATTGGAAGGCATGGGTAGAGCTCTTCACACC AATTTCAATGCTCGGTTTAAATGTGAAGCTTTGAAGCTTGCAATGGTGAAGAATCAGAGGCTTGCAGAAAAATTGATCAAAGGAAACATATATGACTGTG TGTGCAGATACGAACCAGCCAGTTGA
AA sequence Show only first row Show all	>Potri.015G077300.10 pacid=42774931 polypeptide=Potri.015G077300.10.p locus=Potri.015G077300 ID=Potri.015G077300.10.v4.1 annot-version=v4.1 MAGLKEDPILGIDGITIKEELEIGKPEIDRSREDHPVLETGGAVIKGESLINNRSVIDKVREEGSCGQGERDMVPPISNSIHRSGSRPQLDLSKAAIEGT FEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHQDRPTNDKRKKTGKERFGIANGYRRSYPILGGRLHFVKFETSKINECLDFISSKQLHCGGMDS HSWHSETSPNGNAVIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDQNDLFPYLLVNIGSGVSMIKVDGDG KFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRTIDMLVGDIYGGMDYNKIGLSASTIASSFGKTISEKKELADYRPEDISLSLLRMISYNI GQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGD LNEKISWMEKFVQKGTEITAPVPMDPPGTTGLGGFEVPSSKGGTLRSDASALNVGVLHLVPTLEVFSQLADPKMYEPNTIDLSDHNELEYWFTVLSEHLS DLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLANLLELREECLREFQFVDVYRSIKQRENEASLAVLPDLLAELDSMTEETRLLTL IEGVLAANIFDWGSRACVELYHKGTIIEIYRMSRNKMQRPWRVDDFDVFKERMLGSGDKKPRPHKRALLFVDNSGADVVLGMLPLARELLQRGTEVVLVA NSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMINTSDGSKENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGMGRALHT NFNARFKCEALKLAMVKNQRLAEKLIKGNIYDCVCRYEPAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.015G077300 [exp]	0	1
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.008G151500 [exp]	7.28	0.9053	LOX1.8
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.004G144300 [exp]	7.61	0.8805	SQN.2
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Potri.002G081200 [exp]	10.72	0.8496
AT5G24810			ABC1 family protein (.1.2)		Potri.006G276600 [exp]	12.24	0.9043
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	13.96	0.9033
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	18.16	0.9000
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099301 [exp]	18.43	0.9009
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	22.24	0.9009
AT3G14860			NHL domain-containing protein ...		Potri.001G387500 [exp]	24.31	0.8312
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	25.25	0.8941	Pt-VHA1.1

Compare expression of checked genes

Potri.015G077300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.