Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22220 248 / 1e-85 ATISU1, ISU1 SufE/NifU family protein (.1) AT4G04080 224 / 7e-76 ISU3, ATISU3 ISCU-like 3 (.1) AT3G01020 212 / 2e-71 ISU2, ATISU2 ISCU-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081700 [exp] 292 / 6e-103 AT4G22220 253 / 2e-87 SufE/NifU family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042112 [exp] 244 / 6e-84 AT4G22220 261 / 3e-90 SufE/NifU family protein (.1) Lus10002383 [exp] 243 / 3e-83 AT4G22220 260 / 5e-90 SufE/NifU family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0233 [poplar] [flax] SufE_NifU PF01592 [poplar] [flax] NifU_N NifU-like N terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G077500.1 pacid=42774888 polypeptide=Potri.015G077500.1.p locus=Potri.015G077500 ID=Potri.015G077500.1.v4.1 annot-version=v4.1 ATGTTGAGGCTACTGGCATCCGAGAGATTATTGCTTTCCCAAAGAACTCGGATCCTGCCACGTTTCTACCACGAGAAGGTGATTGATCACTTCAACAATC CACGCAACGTAGGGTCTTTTGACAAGAATGATCCGGCGGTCGGCACTGGACTTGTCGGTGCACCTGCCTGTGGTGATGTGATGAAGCTGCAAATTAAGGT TGATGATACCACTGGCGAGATTATCGATGCTCGTTTCAAAACTTTCGGTTGTGGCTCCGCTATTGCTTCCTCCTCTGTTGCTACTGAATGGGTGAAAGGG AAGCAAATGGAGGAAGTGATGACCATAAAAAACACGGAGATTGCAAAACATCTTTCTCTTCCACCAGTTAAGCTGCACTGCAGCATGCTTGCAGAGGATG CTATCAAGGCTGCTGTAAAGGATTATCAAACCAAGCGTGCAAAATTAAGTGGTGTTTCAGAAACCGAACCTGTCGAGCAAGCTGCTCAAGCTTGA
AA sequence Show only first row Show all	>Potri.015G077500.1 pacid=42774888 polypeptide=Potri.015G077500.1.p locus=Potri.015G077500 ID=Potri.015G077500.1.v4.1 annot-version=v4.1 MLRLLASERLLLSQRTRILPRFYHEKVIDHFNNPRNVGSFDKNDPAVGTGLVGAPACGDVMKLQIKVDDTTGEIIDARFKTFGCGSAIASSSVATEWVKG KQMEEVMTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYQTKRAKLSGVSETEPVEQAAQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Potri.015G077500 [exp]	0	1
AT1G02870			unknown protein		Potri.014G130400 [exp]	1.73	0.8832
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Potri.017G030000 [exp]	2.44	0.8791
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Potri.011G144800 [exp]	3.16	0.8562
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Potri.013G012500 [exp]	3.60	0.8308
AT1G20950			Phosphofructokinase family pro...		Potri.006G024500 [exp]	4.47	0.8708
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Potri.003G098000 [exp]	7.34	0.8433
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	8.30	0.8769
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.014G168900 [exp]	9.48	0.8432
AT4G27130			Translation initiation factor ...		Potri.011G134700 [exp]	10.58	0.8481
AT1G47820			unknown protein		Potri.014G121300 [exp]	12.00	0.8061

Compare expression of checked genes

Potri.015G077500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.