Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02235 46 / 4e-06 MADS AGL51 AGAMOUS-like 51 (.1) AT3G18650 43 / 8e-05 MADS AGL103 AGAMOUS-like 103 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G222200 [exp] 103 / 2e-26 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.001G214900 [exp] 52 / 7e-08 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 51 / 2e-07 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 44 / 4e-05 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.010G238900 [exp] 42 / 0.0001 AT3G18650 66 / 1e-12 AGAMOUS-like 103 (.1) Potri.008G020300 [exp] 40 / 0.0005 AT3G18650 75 / 3e-15 AGAMOUS-like 103 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001273 [exp] 52 / 1e-07 AT3G15850 142 / 1e-38 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.015G077800.1 pacid=42776235 polypeptide=Potri.015G077800.1.p locus=Potri.015G077800 ID=Potri.015G077800.1.v4.1 annot-version=v4.1 ATGGCTACAAAATCACAGAAAACGGCTACAAGAAGAGAAAAGTTTATGAAAAAGATTAATGAGGGTAACAAAGAAACCCAAGCAGTGAGCTTCTCAAAGC GAAAGCCAACCTTGAAGAAGAAAGTAGAGGAGCTTAAGACCTTGTGTGCTGTCACGATTTGCATGGTCTGTTTCGGTCCTGATGGCACCGTCGAAACATA CCCAGAGAATGCAGCAGAGGTTAAGAGAGAAATCGGGTTCTACAAAGGACTTCATGCCATGCAGAAACGTGAGTTCAACCTCCTGGGTTATTTAGAGAAT GTCAAGGGAAAGCTCGGATTGAAGAGACAGAAGGTGAAAAGGAAGAAGCTCGAAGCATTGGCCGAGAGTTTTTCAAATCAAATCGAGGGGCTAAGTGGGG ATGCTTTCTTGCACTTCATTGAAACTCTAGAGAAAAAGTTGATGGGTTTGAGGGGGAAAATCGGTGATCTGTTGAGCATCCGCGGTGATAAAGGACAAGC AAATGCTCATGGCAATGATAATACTGATCATGCTTTGGTCCCTTGTGATCGTGCTGTTCCGGAGCCAATAGATGCAAATAACCGTATCTTCATGGTTGAA AACATGTGTGCGAACCCCATAGTTGATGAGGACTTAGCAGAGTACTTCTGGGATTCAGAGCTATTGAAGTTAGCAGGATTCGAGTGCCAGCCCATTACTC CTGAGCAGTAA
AA sequence Show only first row Show all	>Potri.015G077800.1 pacid=42776235 polypeptide=Potri.015G077800.1.p locus=Potri.015G077800 ID=Potri.015G077800.1.v4.1 annot-version=v4.1 MATKSQKTATRREKFMKKINEGNKETQAVSFSKRKPTLKKKVEELKTLCAVTICMVCFGPDGTVETYPENAAEVKREIGFYKGLHAMQKREFNLLGYLEN VKGKLGLKRQKVKRKKLEALAESFSNQIEGLSGDAFLHFIETLEKKLMGLRGKIGDLLSIRGDKGQANAHGNDNTDHALVPCDRAVPEPIDANNRIFMVE NMCANPIVDEDLAEYFWDSELLKLAGFECQPITPEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02235	MADS	AGL51	AGAMOUS-like 51 (.1)		Potri.015G077800 [exp]	0	1
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Potri.011G021700 [exp]	20.34	0.7369
AT1G09157			Protein of unknown function (D...		Potri.010G168400 [exp]	43.26	0.6629
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040550 [exp]	56.39	0.6705
					Potri.010G210600 [exp]	64.27	0.7057
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222550 [exp]	99.94	0.6455
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056301 [exp]	119.62	0.6204
					Potri.007G061560 [exp]	149.14	0.6614
					Potri.010G080633 [exp]	156.93	0.6328
AT2G26490			Transducin/WD40 repeat-like su...		Potri.002G130400 [exp]	192.82	0.6470
AT1G58122		CPuORF45	conserved peptide upstream ope...		Potri.007G113150 [exp]	194.46	0.6392

Compare expression of checked genes

Potri.015G077800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.