Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33320 517 / 0 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT3G01550 359 / 5e-122 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT1G61800 208 / 3e-63 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G17630 207 / 1e-62 Nucleotide/sugar transporter family protein (.1) AT5G54800 201 / 1e-60 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G46110 189 / 7e-57 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT4G03950 85 / 2e-18 Nucleotide/sugar transporter family protein (.1) AT1G21870 83 / 2e-17 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 79 / 3e-16 EamA-like transporter family protein (.1) AT1G43310 71 / 4e-15 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082100 [exp] 622 / 0 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.001G347300 [exp] 421 / 7e-146 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.013G071900 [exp] 206 / 1e-61 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G019900 [exp] 203 / 3e-61 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.001G420200 [exp] 200 / 5e-60 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.011G135900 [exp] 199 / 8e-60 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G048900 [exp] 191 / 1e-57 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.008G095200 [exp] 189 / 2e-55 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.011G057800 [exp] 188 / 3e-55 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042110 [exp] 548 / 0 AT5G33320 528 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10002385 [exp] 487 / 7e-172 AT5G33320 485 / 2e-171 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10013083 [exp] 402 / 2e-138 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10022257 [exp] 254 / 2e-82 AT3G01550 264 / 1e-87 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10011155 [exp] 202 / 5e-61 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10043060 [exp] 203 / 6e-61 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10004312 [exp] 201 / 4e-60 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10019209 [exp] 200 / 8e-60 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10013978 [exp] 199 / 2e-59 AT5G46110 641 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10018356 [exp] 198 / 2e-59 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.015G077900.1 pacid=42775204 polypeptide=Potri.015G077900.1.p locus=Potri.015G077900 ID=Potri.015G077900.1.v4.1 annot-version=v4.1 ATGCAGAGCACAGCCTTCACCTTCTCTCCTTCCCCCTCTCTCCTCAAACCACGACGCCTAATTTCTTCTTCTTCTACTGCTACTTATTCGCTTCCTCCTC GATTCGATCCAATTCGCGCTTTCTCGTCTTCAAAACGATACGATCTCGACTCTAACAATGTCGTTTTCCCTCGCCGATCCTGGTCCTTGTCTTCTGCTTC CAACTCGTCTCTTTCACGGCCCTGGAACCCGTTGCCTCCCTTGGTCTCCGAGAGTAAAACGGAGCGTTTTGAAGTGAGAGCTACGGCTGTTCCAGAGAGT GCTGGCGAGGGAGACGAGAAGAGTAGTCTGGTCAAGACTTTAGAGCTTGGTTTGTTGTTTGGCCTTTGGTATCTTTTTAATATCTACTTCAATATCTATA ACAAGCAGGTTTTGAAGGTATTCCCGAATCCAGTAACTGTTACTGCAGTTCAGTTTGCTGTTGGGACGGTATTAGTTGTTTTTATGTGGACTTTCAATCT ATATAAAAAGCCGAAAATTAGTGGTGCGCAGCTTGCTATGATTCTGCCGTTGGCGGTGGTTCACACCCTAGGGAACCTTTTCACTAACATGAGTCTTGGA AAGGTGGCTGTTTCATTTACTCACACTATCAAAGCTATGGAGCCCTTCTTCTCGGTTGTCCTCTCCGCTATGTTTCTAGGGGAGATGCCTACCCTCTGGG TGGTTGGTTCCCTTTTACCAATTGTTGGTGGAGTGGCGCTTGCCTCAGTCACCGAGGCCTCTTTCAATTGGGCCGGTTTTTGGAGTGCAATGGCTTCTAA TTTGACAAACCAATCTCGTAATGTCCTCAGCAAAAAGGTTATGGTTAAGAATGAGGAATCTATGGACAACATTACTCTTTTCTCCATCATAACAATCATG TCACTTGTCCTATTAGCCCCTGTGACTATCTTCATGGAAGGTGTCAAGTTTACTCCAGCATACCTCCAATCTGCTGGATTGAATGTTAAACAGGTATACA CCAGGTCTCTTATTGCTGCGCTGTGTTTCCATGCCTATCAACAGGTTTCCTACATGATATTGCAAAGGGTATCCCCTGTTACACACTCAGTTGGTAATTG CGTGAAGCGTGTGGTTGTCATTGTGAGCTCCGTCTTCTTCTTCAAGACACCCGTCTCGCCTATCAACTCACTTGGTACTGGCGTTGCTCTTGCTGGAGTT TTCCTGTATTCAAGAGTGAAGCGCATTAAGCCAAAGCCAAAGACAGCTTGA
AA sequence Show only first row Show all	>Potri.015G077900.1 pacid=42775204 polypeptide=Potri.015G077900.1.p locus=Potri.015G077900 ID=Potri.015G077900.1.v4.1 annot-version=v4.1 MQSTAFTFSPSPSLLKPRRLISSSSTATYSLPPRFDPIRAFSSSKRYDLDSNNVVFPRRSWSLSSASNSSLSRPWNPLPPLVSESKTERFEVRATAVPES AGEGDEKSSLVKTLELGLLFGLWYLFNIYFNIYNKQVLKVFPNPVTVTAVQFAVGTVLVVFMWTFNLYKKPKISGAQLAMILPLAVVHTLGNLFTNMSLG KVAVSFTHTIKAMEPFFSVVLSAMFLGEMPTLWVVGSLLPIVGGVALASVTEASFNWAGFWSAMASNLTNQSRNVLSKKVMVKNEESMDNITLFSIITIM SLVLLAPVTIFMEGVKFTPAYLQSAGLNVKQVYTRSLIAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVFFFKTPVSPINSLGTGVALAGV FLYSRVKRIKPKPKTA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Potri.015G077900 [exp]	0	1
AT4G30260			Integral membrane Yip1 family ...		Potri.006G169200 [exp]	3.16	0.9200
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	6.48	0.9275
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	10.48	0.9232
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.005G239900 [exp]	13.41	0.8946
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	15.55	0.8986
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	15.68	0.9223
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.006G116800 [exp]	15.90	0.8984	ENO.1
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Potri.003G109100 [exp]	17.60	0.8936
AT1G30630			Coatomer epsilon subunit (.1)		Potri.011G155800 [exp]	18.11	0.9203	COPE2.1
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	20.07	0.9072	RPT4.1

Compare expression of checked genes

Potri.015G077900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.