Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09590 114 / 2e-28 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT5G09600 99 / 9e-25 SDH3-1 succinate dehydrogenase 3-1 (.1.2.3) AT4G32210 99 / 9e-25 SDH3-2 succinate dehydrogenase 3-2 (.1) AT4G37910 87 / 4e-19 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT5G42020 82 / 2e-17 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 81 / 4e-17 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G49910 76 / 4e-15 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT1G09080 75 / 6e-15 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT4G24280 75 / 8e-15 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT5G02500 69 / 7e-13 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285100 [exp] 370 / 7e-130 AT5G09590 108 / 3e-26 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.009G079700 [exp] 130 / 5e-34 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G285500 [exp] 113 / 3e-28 AT5G09590 934 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G087500 [exp] 82 / 2e-17 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 81 / 9e-17 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 78 / 5e-16 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 78 / 5e-16 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.004G224400 [exp] 76 / 2e-15 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.003G006300 [exp] 75 / 7e-15 AT4G24280 1110 / 0.0 chloroplast heat shock protein 70-1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042000 [exp] 112 / 5e-28 AT5G09590 866 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10018003 [exp] 112 / 9e-28 AT5G09590 1065 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10041999 [exp] 112 / 2e-27 AT5G09590 1138 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009677 [exp] 110 / 4e-27 AT5G09590 1152 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009039 [exp] 110 / 5e-27 AT5G09590 1147 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10017306 [exp] 82 / 2e-17 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10032430 [exp] 82 / 2e-17 AT5G42020 1033 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10023043 [exp] 82 / 2e-17 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10003202 [exp] 81 / 1e-16 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10027341 [exp] 77 / 2e-15 AT4G24280 1003 / 0.0 chloroplast heat shock protein 70-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00012 [poplar] [flax] HSP70 Hsp70 protein CL0335 [poplar] [flax] FumRed-TM PF01127 [poplar] [flax] Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Representative CDS sequence Show only first row Show all	>Potri.015G078000.1 pacid=42776014 polypeptide=Potri.015G078000.1.p locus=Potri.015G078000 ID=Potri.015G078000.1.v4.1 annot-version=v4.1 ATGGCCACCGCTGCTCTCCTCCGCTCTCTACGACGCCGTGACGTCGCCTCCGCTCCTCTTTCGTCCTACAGAAGCTTGACTAATGATGTGAGTCCAAAGT GGGCTTCTTCTAATTTCAGCCAAAATTGGGCTGGTTTGTCAAGAGCTTTGAGTGCAAAACCTGCATGTGGAGATTTTATTGGTGTTGATCTGGGTACTGC AAATTCATGTGCTGCTGTTATGGAAGGGAAGAATCCCAAAGTTTTTGAGAATGCTGAAGGATGTAGGATAACCCCCTCAGCTGTTACCTTCTCCCCAAAG ATAGTAGCTGGGATCTTTGGAAAGAGCCCAAGCAAGGGAGTAAACCCAGTTGGGGCAGTGGCTATGGGAGCTGCAATTCAGGGTGGAATTTTACGTGGAG GTGTCAAAGAATTGCGTCTCCTTGATGTTGCTCCCTTGTCACTTGGTATCAAGACACGGGTTTTCTCCACAGGGACTGACAACAAGACCCAGGTTACGGG TATTCCGCCACCTCCCAGGGGCACGCCTCAAATTGAGGTGACCTCTGACATTGATCAACCTAATACCTCACATATCCTTCGCCCATTATCTCCTCATCTT CCTATTTATAGCCCCCAGGTTCATTCAACATTTTCCATTGTCAATAGAATCTCCGGGGCTTACCTATCTGCTCTAGTTTTGTTTTTTTGTCTTATTTGTC TGAAAGCGGGTTCGATTTGCTTCACCTATTATAGTTTCTACCAATTCCTCTTTTATTCATCCAAGCTGATCCTACCTGTTGTCGATGTTACCGCCGCCCT TGCCCTGACCTATCATCTGTTTTATGGGGTTCGTCATTTACTGCATTGA
AA sequence Show only first row Show all	>Potri.015G078000.1 pacid=42776014 polypeptide=Potri.015G078000.1.p locus=Potri.015G078000 ID=Potri.015G078000.1.v4.1 annot-version=v4.1 MATAALLRSLRRRDVASAPLSSYRSLTNDVSPKWASSNFSQNWAGLSRALSAKPACGDFIGVDLGTANSCAAVMEGKNPKVFENAEGCRITPSAVTFSPK IVAGIFGKSPSKGVNPVGAVAMGAAIQGGILRGGVKELRLLDVAPLSLGIKTRVFSTGTDNKTQVTGIPPPPRGTPQIEVTSDIDQPNTSHILRPLSPHL PIYSPQVHSTFSIVNRISGAYLSALVLFFCLICLKAGSICFTYYSFYQFLFYSSKLILPVVDVTAALALTYHLFYGVRHLLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.015G078000 [exp]	0	1
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.008G166800 [exp]	6.70	0.8235	CMDH.2
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	13.11	0.8378
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.015G023300 [exp]	18.02	0.7523	Pt-UBC.4
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	20.44	0.8306
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.019G057300 [exp]	20.49	0.8173	Pt-MSD1.1
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.002G255900 [exp]	21.07	0.8300
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.019G047200 [exp]	22.04	0.7172
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	23.32	0.7879
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Potri.010G216600 [exp]	30.69	0.8222
AT4G25030			unknown protein		Potri.010G219900 [exp]	32.24	0.7362

Compare expression of checked genes

Potri.015G078000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.