Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06110 49 / 3e-06 SKIP16 SKP1/ASK-interacting protein 16 (.1) AT1G27510 41 / 0.001 Protein of unknown function (DUF3506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082300 [exp] 439 / 6e-157 ND / Potri.017G027000 [exp] 61 / 2e-10 AT1G06110 545 / 0.0 SKP1/ASK-interacting protein 16 (.1) Potri.007G130900 [exp] 54 / 5e-08 AT1G06110 557 / 0.0 SKP1/ASK-interacting protein 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027693 [exp] 359 / 3e-125 AT1G06110 49 / 2e-06 SKP1/ASK-interacting protein 16 (.1) Lus10039964 [exp] 355 / 4e-121 AT5G62960 247 / 7e-78 unknown protein Lus10004805 [exp] 51 / 6e-07 AT1G06110 542 / 0.0 SKP1/ASK-interacting protein 16 (.1) Lus10027696 [exp] 43 / 0.0003 AT1G27510 635 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10039967 [exp] 42 / 0.0003 AT1G27510 621 / 0.0 Protein of unknown function (DUF3506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [poplar] [flax] AAA_lid PF02151 [poplar] [flax] UVR UvrB/uvrC motif CL0159 [poplar] [flax] E-set PF04379 [poplar] [flax] DUF525 ApaG domain
Representative CDS sequence Show only first row Show all	>Potri.015G078100.2 pacid=42776201 polypeptide=Potri.015G078100.2.p locus=Potri.015G078100 ID=Potri.015G078100.2.v4.1 annot-version=v4.1 ATGCAGTCACTCAATCTGAAATTGTTAACGGATTTTAGTACGGGTACGAGGAGGTTTGTTCCGGGTCGGAGCTTCGGTACGGAGTGGAGACAGTGTTTGA ATTTGAGGAATTACAACCGAAATTGTCGGATTGTAGCATGTTCTGTTGAGAGAGATGGAGGGGGTGAAGGAACAAGTTCAAGTTCAAGTTCGAGTTCGAG TTCGGACCCTAGTCCGAGTTCCTTTTTGTCTCGCAGTCAAACTTATGCTATGCTCAAACAACAAATGGAGGTTGCTGCACAATCTGAGGACTATGAAGAA GCTGCAAGACTTCGTGATTCATTGAGATCATTTGAGGAAGTGGAACCAGTTTTGCGGCTTCGTAGGTTGCTTAAGGAGGCAGTTGCTGATGAGCGGTTTG AGGATGCAACTAGGTATCGCGATGAGCTAAAGGAAATTGCACCACTTTCTCTCTTGAAATGTTCAAGTGATGCAACTACCTTGGGGATAAGGGTTCAAGT TAGGAGCGTGTACATTGAGGGCCGAAGTCAGCCTTCAAAGGGGCAGTACTTCTTTGCATATAGAATAAGAATCACTAATAACTCAGATCGCCCTGTTCAA CTTCTCAGAAGACACTGGATTATCACAGATGCCAATGGAAAAACTGAAAATTTTTGGGGAGTTGGAGTTATAGGTGAACAGCCGGTTATACTTCCTAGGA CAGGATTTGAATACTCATCTGCATGCCCACTTTGCACTCCCAATGGTAGAATGGAAGGTGACTTTGAGATGAAACACATTGACAAAGCTGGCTCACCCAC GTTCAATGTTGCTATTGCGCCGTTCTCTCTCTCAATACTAGGAGATGGAAGTGATGCTTTTTGA
AA sequence Show only first row Show all	>Potri.015G078100.2 pacid=42776201 polypeptide=Potri.015G078100.2.p locus=Potri.015G078100 ID=Potri.015G078100.2.v4.1 annot-version=v4.1 MQSLNLKLLTDFSTGTRRFVPGRSFGTEWRQCLNLRNYNRNCRIVACSVERDGGGEGTSSSSSSSSSSDPSPSSFLSRSQTYAMLKQQMEVAAQSEDYEE AARLRDSLRSFEEVEPVLRLRRLLKEAVADERFEDATRYRDELKEIAPLSLLKCSSDATTLGIRVQVRSVYIEGRSQPSKGQYFFAYRIRITNNSDRPVQ LLRRHWIITDANGKTENFWGVGVIGEQPVILPRTGFEYSSACPLCTPNGRMEGDFEMKHIDKAGSPTFNVAIAPFSLSILGDGSDAF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.015G078100 [exp]	0	1
AT1G33270			Acyl transferase/acyl hydrolas...		Potri.001G209500 [exp]	2.23	0.9656
AT3G01060			unknown protein		Potri.017G090100 [exp]	2.23	0.9788
AT5G43260			chaperone protein dnaJ-related...		Potri.003G171800 [exp]	2.64	0.9650
AT2G42130			Plastid-lipid associated prote...		Potri.016G045900 [exp]	5.74	0.9468
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	6.00	0.9756	PETC.1
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Potri.003G113500 [exp]	8.48	0.9690
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.010G066900 [exp]	8.48	0.9629	Pt-PGR5.1
AT5G51010			Rubredoxin-like superfamily pr...		Potri.015G108100 [exp]	8.77	0.9630
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016000 [exp]	10.00	0.9657
AT3G17930			unknown protein		Potri.015G036500 [exp]	10.58	0.9615

Compare expression of checked genes

Potri.015G078100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.