Plant FIBer expression Database

Potri.015G078200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62960 382 / 8e-133 unknown protein
AT1G10660 296 / 2e-99 unknown protein
AT3G27770 247 / 3e-80 unknown protein
AT2G47115 177 / 3e-53 unknown protein
AT1G70505 0 / 1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G082400
[exp]
550 / 0 AT5G62960 387 / 1e-134 unknown protein
Potri.010G042600
[exp]
358 / 1e-123 AT1G10660 372 / 1e-129 unknown protein
Potri.001G347400
[exp]
323 / 9e-110 AT3G27770 314 / 9e-107 unknown protein
Potri.002G190200
[exp]
228 / 3e-72 AT2G47115 344 / 1e-118 unknown protein
Potri.014G115200
[exp]
225 / 3e-71 AT2G47115 340 / 4e-117 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042109
[exp]
421 / 6e-148 AT5G62960 397 / 1e-138 unknown protein
Lus10027692
[exp]
388 / 2e-135 AT5G62960 355 / 2e-122 unknown protein
Lus10002386
[exp]
327 / 1e-111 AT5G62960 320 / 5e-109 unknown protein
Lus10032130
[exp]
305 / 2e-102 AT5G62960 303 / 2e-101 unknown protein
Lus10029133
[exp]
302 / 2e-100 AT1G10660 338 / 5e-115 unknown protein
Lus10014556
[exp]
296 / 4e-99 AT5G62960 305 / 3e-102 unknown protein
Lus10039964
[exp]
270 / 1e-86 AT5G62960 247 / 7e-78 unknown protein
Lus10030594
[exp]
214 / 9e-68 AT1G70505 261 / 6e-86 unknown protein
Lus10030895
[exp]
209 / 1e-65 AT1G70505 256 / 6e-84 unknown protein
Lus10038056
[exp]
204 / 2e-63 AT1G10660 252 / 1e-82 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G078200.1 pacid=42776079 polypeptide=Potri.015G078200.1.p locus=Potri.015G078200 ID=Potri.015G078200.1.v4.1 annot-version=v4.1
ATGAGTTTTATAACAGGATCACCCAAGGATACCTGGCAACCAGTCATGACTGCCGATACAACCACTGCCAGTTATTGGCTAAACTGGAGGTTTTTACTCT
GTGCTATTTGGGTCTTAATCTTGATGACGATAGCATCAATTCTTATATGGAAAAATGAACATCGGTGCGAAGTGGAACGTGATAGTGGAGGGAACAGGCA
AGAAGCAGAAGCGCCTTTTTATGATGATGAAACTTGGAGGCCATGCCTGAAAGGAATCCACCCTGCCTGGTTGCTAGTTTTCAGACTTTTTGCTTTCTTT
GCTCTCTCAGTGCTGCTCATCATTTCTGTATTTGTGGATGGAGGCAGTATATTTTACTACTATACTCAGTGGACTTTTACTTCAGTCACAATTTATTTTG
GGCTTGGTTCCTTACTCTCCATACGAGGTTGCTATCAATATCACAAAAGAGCTGGTGATAAGAGGGTTGATAATGTAGAGGCAGATCCAGAGCAAGGAAC
TTGTGTATCTCCATCAGTTGGACAGAGTTTTAACACTTCCATGGCAATGAAAAGCTCAAACTCCCACGAAAGACTTGATGTTCGCCAACCTGCAGGGAAA
TTGGCTTTCATCTTTCAAATCATTTTTCAGATGAATGCTGGGGCTGTTATGCTCACAGACTGTGTCTTTTGGTTCATCCTTGTCCCGTTTCTTGCAATCA
AAGATTACCACCTAAATGCTTTGATCATCGGCATACACTCACTCAATGCTGTTTTCCTACTTGGTGATACTGCTTTAAATTCCTTGAGGTTTCCTTGGTT
CCGGATCGCATATTGCTTCACGTGGACAATAGTATATGTCCTATTCCAGTGGATTCTCCATGCCACTTTCAGACTTTGGTGGCCATATCCATTCCTTGAC
TTGTCATCTCCGTATGCTCCTTTATGGTACTTCTCGGTAGCAGTAATGCACATCCCCTGCTATTGTGTTTTCGCTTTTATTGTAAAGCTGAAACGCACAG
TGTTTTCAAGATGGTTCCCAGACTCCTATCGAAGTCTGAGGTAG
AA sequence
>Potri.015G078200.1 pacid=42776079 polypeptide=Potri.015G078200.1.p locus=Potri.015G078200 ID=Potri.015G078200.1.v4.1 annot-version=v4.1
MSFITGSPKDTWQPVMTADTTTASYWLNWRFLLCAIWVLILMTIASILIWKNEHRCEVERDSGGNRQEAEAPFYDDETWRPCLKGIHPAWLLVFRLFAFF
ALSVLLIISVFVDGGSIFYYYTQWTFTSVTIYFGLGSLLSIRGCYQYHKRAGDKRVDNVEADPEQGTCVSPSVGQSFNTSMAMKSSNSHERLDVRQPAGK
LAFIFQIIFQMNAGAVMLTDCVFWFILVPFLAIKDYHLNALIIGIHSLNAVFLLGDTALNSLRFPWFRIAYCFTWTIVYVLFQWILHATFRLWWPYPFLD
LSSPYAPLWYFSVAVMHIPCYCVFAFIVKLKRTVFSRWFPDSYRSLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62960 unknown protein Potri.015G078200
[exp]
0 1
AT3G20420 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-l... Potri.011G086700
[exp]
1.73 0.7788
AT3G21175 GATA GATA24, TIFY2B,... ZIM LIKE 1, GATA TRANSCRIPTION... Potri.005G152500
[exp]
3.46 0.7740
AT5G48970 Mitochondrial substrate carrie... Potri.008G210000
[exp]
8.83 0.7402
AT5G26180 S-adenosyl-L-methionine-depend... Potri.006G224000
[exp]
12.64 0.8368
AT5G08560 transducin family protein / WD... Potri.008G002700
[exp]
13.19 0.7694
AT2G18193 P-loop containing nucleoside t... Potri.007G020600
[exp]
21.07 0.7894
AT4G19600 CYCT1;4 Cyclin family protein (.1) Potri.010G090400
[exp]
21.49 0.7425
AT4G03080 BSL1 BRI1 suppressor 1 (BSU1)-like ... Potri.002G213300
[exp]
26.15 0.7093 Pt-PP1.5
AT1G05120 Helicase protein with RING/U-b... Potri.014G154600
[exp]
31.62 0.7604
Potri.014G064900
[exp]
35.49 0.7112

Potri.015G078200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.