Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48195 778 / 0 Phox (PX) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082500 [exp] 1641 / 0 AT3G48195 728 / 0.0 Phox (PX) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042108 [exp] 888 / 0 AT3G48195 657 / 0.0 Phox (PX) domain-containing protein (.1) Lus10001232 [exp] 702 / 0 AT3G48195 642 / 0.0 Phox (PX) domain-containing protein (.1) Lus10001233 [exp] 174 / 9e-47 AT3G48195 68 / 6e-12 Phox (PX) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [poplar] [flax] PX PX domain CL0229 [poplar] [flax] RING PF13901 [poplar] [flax] zf-RING_9 Putative zinc-RING and/or ribbon
Representative CDS sequence Show only first row Show all	>Potri.015G078300.1 pacid=42775751 polypeptide=Potri.015G078275.1.p locus=Potri.015G078300 ID=Potri.015G078300.1.v4.1 annot-version=v4.1 ATGATTCATAATGGAGAAGGGACCCACGACACCATCCCGAGGCCCACCTCTTCTGATCCGTTCGGTTCTATCAAACCGGACGGTGGTGATGCATCGCCTG CATCAGCATCACAGCATTCCTCATGTGGAGAATCGGAGTTCGAGCGGTACTGTAGCGCCACCTCAGTTATGGGCACACCTAGTATTTGTAGTGGTTCGTT TGGTCCTTCTTTTAATGATTGTATAAAGTCTGATGTTGAGTCCTTAAAAAGTTTGGATAATTTTAGCCTGGGGCCGAAAAGTTTCCATTTTGGGTTTGAT GATAATAGGAACTTAGAGGATCAAAAGCTTTCAAATTCGGTTATTGATTGTTTAGATAGCAGTTTTGAAGAAAATGGGATTGATGGGTTGGAAATTCGTG GTAGTGAAATGGACAGTAAGCGGGAGAGTGTTCGTTTGGGAATTGAGAATGGAGAGAATGATGGTTGTTCAAGTGGGTTGGATGTGGAGGTGGGTTTGGG GTTTGATGGAGGGGAAGTGGAGAGAGGGGAAGATGGGGGTTCGTCTAGATATGGCTATTCGGAAGATGATGATTCGATGTATGGGTGTGGTTCGGATGAT GAGAATAGGAAGAATTTGAATTTTCGGAAGACTGTGTTGCTTGGTGAGGAAGGGAAAGTTGGTGATGCGAACCCGTTGATTATGAGTTCATCTGTGGCTT TTGGGTCGGAGGATTGGGATGATTTTGAGCTAGAAACAAGGGGAGGCATTGGAGCTTCTTTTACCTTGGATAAATTTCAGCAGCCGGAGCAGGGTCAGGA GACTGATGGAAACTTTTTTAGTTCTACTTCTGTGGCTTTGACTGTGGCACCAGTTGTTGGTGAAACAGAAATAGGGAAAGGTTTGATGGAGGAACATGCT GGCATCAGAGACAGTGCAGCTGATGGTTCAGGAGAGAAGCTCAATTCTGTTACTAAGGTCCCTTTTGGTGTACAGAATTCTGTCGTGGACCAAGTGGAAG ATGTGAGAGACATTCCTGTAGCCAGTTGTCAGGTGCAAGGTGGTCATGAATTAGCCAAAGATGATAAAGGTACCTCGATCGTGCCAGTTGGTTTTCCAGG CTATTGTGAACCACAGGAAGAAGATGTTATAAATATTTCTTTTAACTGCAATCAAGTCCAAGGTGCTAATGATACAACAGAGCTTTATAAAAATTGTCCT GTCAGTAGTGTCTTTGAGGTGGAGCAGGAACCTCTGGTAGAAAAATCTCCCATAGGGTTAGGAATGGATTTTACAGATCATCATGTGGATGATCTGAATC CATCTGTGAAATCCGGGGAAGTTGTTTGCACTGATGACAACGTAACTTTGGAAAATGAAGAGGCTGGGAATTTAAAAGTAGAGGCAGACCCCTTTTCTGA TACAACCAATCAACTTTGTTCCCGCACAGCTGAATATTCAGAAAATGCAAGTGCAGAATTCATTGTGGACCAAAAACTAAATTCAACTCAGTCAATGCTT GAAAATAACATGAAGAAAGCATCAGAAAATGCTCCTGGTTCTGTGATTCCTTACAAAGACCATCCTGCGGTGGTTAAGGCAGAGAATTTTGAGCTCATTG AATTTTACGATGAGATTGTTAATGAAATGGAAGAAATTTTACTTGATTCTGTTGAGTCTCCAGGGGCCAGGTTTCCTCGGGGTAATCACATGTTTCAGTC ACAGCTATTAGTGTCAACTGCTTCTACTTCTGGTACTGATGAGGCTTATATGCTAATTACACAGCCACAGAGAATTGATAGGGTTGAAGTAGTAGGTGCA AAGCAGAAGAAGGGAGATGTCTCACTTAGCGAAAGGTTGGTTGGAGTGAAGGAATATACTGCATATATAATAAGGGTATGGAGTGGCAAAAACCAGTGGG AGGTTGAACGCAGGTATCGTGATTTCTATACACTCTATCGTAGGCTGAAATCATTATTTGCTGACCAGGGCTGGACTCTTCCTTCTCCATGGTCCTCTGT GGAAAAGGAATCTAGAAAAATATTCGGGAATGCATCTCCAGATGTTGTTTCTGAGAGAAGTGTTCTTATTCAGGAGTGTTTACATTCAACTATCCATTCT GGGTTCTTTTCCAGTCCCCCAAGTGCACTGGTTTGGTTCTTGTTTCCTCGAGATTCATTTCCTAGTTCCCCAGCGGCAAGAACACTAGTTCCTCAGTCTG TATTTTCTAACAGAGGGGAAGATGCAGGAAATATTTCCACTTTAGGGAAGACAATATCACTTATTGTTGAAATTCGGCCATTCAAATCTACTAAACAGAT GCTAGAAGCACAACATTATACTTGTGCCGGATGCCACAACCATTTTGATGATGGGATGACATTAATGCGGGACTTTGTACAGACACTTGGGTGGGGAAAG CCTCGACTTTGCGAGTACACTGGTCAGTTATTTTGTTCCTCATGCCATACAAATGAGACTGCAGTTTTGCCAGCAAGAGTTCTACATTATTGGGATTTTA TTCAATACCCAGTTTCTCAGTTGGCCAAGTCATACCTGGATTCCATCCATGAACAGCCCATGCTTTGTGTAAGTGCGGTCAATCCTTTCCTATTCTCCAA GGTCCCAGCCTTGCACCATATCATGGATGTCAGGAAAAAAATTGGAACTATGCTTTCATATGTTCGATGTCCATTCTGCAGGACCATCAATGAAGGACTC GGTTCTCGAAGATATCTTCTTGAAGGCAATGATTTTTTTGCCCTTAGAGACCTCATAGATCTCTCAAAAGGGGCTTTTGCAGCACTACCAGTGATGGTGG AAACTGTTTCAAGGAAAATCCTGGAGCATATAACAGAGCAATGCCTCATATGCTGTGATGTGGGAGTCCCCTGCAGTGCCCGTCAAGCTTGTAATGATCC ATCCTCACTCATTTTTCCTTTTCAGGAAGGCGAAATTGAAAGGTGTGCTTCTTGCGAATCAGTATTCCACAAGCCCTGCTTCAGCAAGCTTACAAATTGC TTTTGTGGGGCACACCTCAGGACAGACGAGGTCATGGAGTCAACCAGTAGCTTGAGCCGTAAGGCCAGTGGTCTCATTCTGGGAAGGAGATCGGGCTCTG CTATGGGTCTAGGATTGTTCTCCGAATTATTTTCGAAGGCAAATCCGGAAAAAGTGAAGGATCACAAGGATAATGATGCTTTTATTTTAATGGGTTCTTT GCCAAGCAATTTTCTTTAA
AA sequence Show only first row Show all	>Potri.015G078300.1 pacid=42775751 polypeptide=Potri.015G078275.1.p locus=Potri.015G078300 ID=Potri.015G078300.1.v4.1 annot-version=v4.1 MIHNGEGTHDTIPRPTSSDPFGSIKPDGGDASPASASQHSSCGESEFERYCSATSVMGTPSICSGSFGPSFNDCIKSDVESLKSLDNFSLGPKSFHFGFD DNRNLEDQKLSNSVIDCLDSSFEENGIDGLEIRGSEMDSKRESVRLGIENGENDGCSSGLDVEVGLGFDGGEVERGEDGGSSRYGYSEDDDSMYGCGSDD ENRKNLNFRKTVLLGEEGKVGDANPLIMSSSVAFGSEDWDDFELETRGGIGASFTLDKFQQPEQGQETDGNFFSSTSVALTVAPVVGETEIGKGLMEEHA GIRDSAADGSGEKLNSVTKVPFGVQNSVVDQVEDVRDIPVASCQVQGGHELAKDDKGTSIVPVGFPGYCEPQEEDVINISFNCNQVQGANDTTELYKNCP VSSVFEVEQEPLVEKSPIGLGMDFTDHHVDDLNPSVKSGEVVCTDDNVTLENEEAGNLKVEADPFSDTTNQLCSRTAEYSENASAEFIVDQKLNSTQSML ENNMKKASENAPGSVIPYKDHPAVVKAENFELIEFYDEIVNEMEEILLDSVESPGARFPRGNHMFQSQLLVSTASTSGTDEAYMLITQPQRIDRVEVVGA KQKKGDVSLSERLVGVKEYTAYIIRVWSGKNQWEVERRYRDFYTLYRRLKSLFADQGWTLPSPWSSVEKESRKIFGNASPDVVSERSVLIQECLHSTIHS GFFSSPPSALVWFLFPRDSFPSSPAARTLVPQSVFSNRGEDAGNISTLGKTISLIVEIRPFKSTKQMLEAQHYTCAGCHNHFDDGMTLMRDFVQTLGWGK PRLCEYTGQLFCSSCHTNETAVLPARVLHYWDFIQYPVSQLAKSYLDSIHEQPMLCVSAVNPFLFSKVPALHHIMDVRKKIGTMLSYVRCPFCRTINEGL GSRRYLLEGNDFFALRDLIDLSKGAFAALPVMVETVSRKILEHITEQCLICCDVGVPCSARQACNDPSSLIFPFQEGEIERCASCESVFHKPCFSKLTNC FCGAHLRTDEVMESTSSLSRKASGLILGRRSGSAMGLGLFSELFSKANPEKVKDHKDNDAFILMGSLPSNFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48195			Phox (PX) domain-containing pr...		Potri.015G078300 [exp]	0	1
AT2G14680		MEE13	maternal effect embryo arrest ...		Potri.001G292800 [exp]	5.19	0.7074
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.012G097300 [exp]	5.47	0.6781
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	8.00	0.7200
AT1G48540			Outer arm dynein light chain 1...		Potri.015G036300 [exp]	10.00	0.7275
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G448000 [exp]	10.95	0.6506
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.015G146700 [exp]	11.48	0.6775
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	11.83	0.6600
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.010G210100 [exp]	14.49	0.6764
AT5G57160		ATLIG4	DNA ligase IV (.1)		Potri.018G141900 [exp]	15.09	0.6957	LIG4.1
AT2G37130			Peroxidase superfamily protein...		Potri.006G129900 [exp]	15.87	0.6609

Compare expression of checked genes

Potri.015G078300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.