Plant FIBer expression Database

Potri.015G078500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66540 360 / 7e-119 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G082600
[exp]
528 / 0 AT5G66540 342 / 8e-112 unknown protein
Potri.003G194550
[exp]
55 / 2e-09 AT5G66540 56 / 2e-10 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001234
[exp]
352 / 2e-116 AT5G66540 332 / 9e-109 unknown protein
Lus10042107
[exp]
350 / 6e-113 AT5G66540 400 / 6e-133 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04006 Mpp10 Mpp10 protein
Representative CDS sequence
>Potri.015G078500.1 pacid=42775985 polypeptide=Potri.015G078500.1.p locus=Potri.015G078500 ID=Potri.015G078500.1.v4.1 annot-version=v4.1
ATGGCAAAACCAGTCGAAGCAGAAGCAGCAGGCATGGAAGCCTTAAACCGCCTAAAATCCATTGACCCACCACTATGGCTAGCACCATCGTCCTCTCTGT
CTCAAACAGCACGCACAGCTTGTAAACATCTCTTCTCGTCAATAAATCCCCATGTCCCTAAATCCCCCTTTGATCAACTTCTAATTGATGGGTGTGATGC
TGAGCAGATTTGGCAGCAAATTGACTTACAATCACAGCCCTTGTTGTCCAGTTTACGCCGTCAAGTTTTGCACTTTCAGAAGAATCCAGAGGAAATTAAA
GTAAATGGTGACAAAGTTTTACAAGGGAAAAAAAAGGGCGTAGAAGACAAGGAGGTGAAAAAAGTTGATGAGTTTGATAATAGTGATGATGAGGATATGT
ATGAAATTGATGATGAAGATGACAGTGATGATGATGCGGACGGAGGTGAGGAGGAAGAGAGTGGAGAAGAGGAGGGAGAAAAGGGAGTGATCGAGGATAA
GTTTTTGAAGATAAAGGAATTGGAGGATTTTTTGGAGGAGGAGGATGCCAAGGAATATGGATTGGATACAAGGAAGAATAATAAGAAAAAGAATTTAAGC
GACGAGGAGGAGGATGAAGAGGACGAGGAAGATGATGATGATGAAGGGGAGGAGGAGGAGGATGAGGATGAAGATGATGAGGACAAGGAAGATGATGAGC
TTGGAGTTTTTGGTAATGGCGATGATGAAGATGAGGATGCAAGCAAGCGTGCCAGATACGAAGACTTCTTTGGTGGTAAAAAGAGAAAAATCTTAAAAAA
GAAAACAAAAGAAGACTCAAGCTCAGATGATGAACTTGATGATGAAGCATTGAATGAGAGAAAAGGTAGACTTTCTACCCATGAAAAACAACTTCAGAAG
CTTCAATCTGAGATAGAACAGATGGAGAAATCAAATTTGGAGCCCAAAACTTGGACCATGCAAGGAGAGGTAACTGCTGCAAGCAGACCCAAGAATAGTG
CGTTAGAAGTTGATTTAGACTTTGAACACAATATGAGGCCCGCCCCTGTAATCACTGAGGAGGTTACTGCAACACTTGAAGATATGATTAAGAGTAGGAT
CATTGAGGGGCGGTTTGATGACATTCGGAAGGCTCCCAGTTTACACTCTAAAGCACCAAGAGAACTGAAAGAGTTGGATGAGAATAAGAGCAAGAAGGGT
CTTGCCGATGTTTATGAGGAAGAATATGTTCAAAAGACAAATCCAGCAGCTGCTCCATTATCTTTCTCGGATGAACAGAAGAAGGAGGCAAGTGTCCTGT
TCAAAAAACTGTGCTTGAAGTTGGATGCTCTTTCTCATTTCCACTTTGCTCCTAAACCTGTCATAGAGGACATGTCTATCCAAGCAAATGTCCCTGCTCT
TGCTATGGAGGAGATTGCACCAATGGCAGTTTCAGATGCAGCAATGCTGGCTCCTGAGGAAATTTTTTCGGGCAAAGGTAATATCAAGGAAGAAGCAGAA
CTTACAAAGGCCGAGAGGAAGAGGAGGAGGGCTAACAAGAAAAGAAAATTTAAGGCCGAATCAGTGAAAAGGATGCCAAAGAAGGCACAAGAGAACACAA
CACTAAACCACGATGATGGCAAGGAAGAATCATAA
AA sequence
>Potri.015G078500.1 pacid=42775985 polypeptide=Potri.015G078500.1.p locus=Potri.015G078500 ID=Potri.015G078500.1.v4.1 annot-version=v4.1
MAKPVEAEAAGMEALNRLKSIDPPLWLAPSSSLSQTARTACKHLFSSINPHVPKSPFDQLLIDGCDAEQIWQQIDLQSQPLLSSLRRQVLHFQKNPEEIK
VNGDKVLQGKKKGVEDKEVKKVDEFDNSDDEDMYEIDDEDDSDDDADGGEEEESGEEEGEKGVIEDKFLKIKELEDFLEEEDAKEYGLDTRKNNKKKNLS
DEEEDEEDEEDDDDEGEEEEDEDEDDEDKEDDELGVFGNGDDEDEDASKRARYEDFFGGKKRKILKKKTKEDSSSDDELDDEALNERKGRLSTHEKQLQK
LQSEIEQMEKSNLEPKTWTMQGEVTAASRPKNSALEVDLDFEHNMRPAPVITEEVTATLEDMIKSRIIEGRFDDIRKAPSLHSKAPRELKELDENKSKKG
LADVYEEEYVQKTNPAAAPLSFSDEQKKEASVLFKKLCLKLDALSHFHFAPKPVIEDMSIQANVPALAMEEIAPMAVSDAAMLAPEEIFSGKGNIKEEAE
LTKAERKRRRANKKRKFKAESVKRMPKKAQENTTLNHDDGKEES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66540 unknown protein Potri.015G078500
[exp]
0 1
AT5G09880 Splicing factor, CC1-like (.1) Potri.005G148100
[exp]
1.73 0.8582
AT3G01160 unknown protein Potri.005G108800
[exp]
2.82 0.8544
AT5G62190 PRH75 DEAD box RNA helicase (PRH75) ... Potri.015G133400
[exp]
4.89 0.7655 PRH75.2
AT5G50310 Galactose oxidase/kelch repeat... Potri.015G090100
[exp]
5.47 0.7819
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Potri.013G145300
[exp]
5.47 0.8018
AT1G31970 STRS1 STRESS RESPONSE SUPPRESSOR 1, ... Potri.003G098800
[exp]
6.32 0.7942
AT1G15420 unknown protein Potri.003G060900
[exp]
7.21 0.6565
AT3G55340 PHIP1 phragmoplastin interacting pro... Potri.010G209701
[exp]
10.09 0.7739
AT2G34780 EMB1611, MEE22 EMBRYO DEFECTIVE 1611, materna... Potri.011G161901
[exp]
11.22 0.7700
AT4G01560 MEE49 maternal effect embryo arrest ... Potri.002G182600
[exp]
11.40 0.7534

Potri.015G078500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.