Plant FIBer expression Database

Potri.015G078600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63000 291 / 2e-101 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039963
[exp]
249 / 1e-84 AT5G63000 269 / 1e-92 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Lus10027691
[exp]
246 / 1e-82 AT5G63000 260 / 3e-88 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info
Representative CDS sequence
>Potri.015G078600.1 pacid=42774870 polypeptide=Potri.015G078600.1.p locus=Potri.015G078600 ID=Potri.015G078600.1.v4.1 annot-version=v4.1
ATGGGAGGCACTGAAGAAACAGTCTCCACTCAGTATGCTCCAAAAATGGCTGGAACTGTTAACTGGGGTACGGCGACTGTGGTTGGAGTATTTGCAGGCA
TGTTGTATGGAGGTAGCAAGGAGGCTGCTGCATCTGTGAGCAAGGATGCAGAAGTGATGTTAAAGCTTGGGAGCACTCCAGATAAGCGTGAACAGCATAG
ATTAATGAGAGATGCTATGGAGAAAAGGTTTATCCGAGTGACTCGCGGTTCCATAGTTGGCGGAGTACGACTTGGAATGTTCACCGCTGAATTCTATGGA
TTACAAAATCTACTGGCTGAGAAACTGGGGGTGCATGGTATTTTTAATGTTGTCGGAGCTGGATCTGCCACTGCTGCAACATTTGGTTTAATTATGCCTG
GCTCTCTTCGGTGGCGTGCAAGGAATGTGCTGCTTGGATTATTTATGGGAGCAGCATTCTGTTTTCCTCTTGGGTGGATTCATTTGAAGCTTGTAGAGAA
AGCAAATGAAGGAAGCTCGGGGGAGAGGGGAGAAGCAAAAAGTGGTGTTGGGGCTACAATTGAGAGGCTTGAAGGAAACTTGAAAAAAAAAATCTGA
AA sequence
>Potri.015G078600.1 pacid=42774870 polypeptide=Potri.015G078600.1.p locus=Potri.015G078600 ID=Potri.015G078600.1.v4.1 annot-version=v4.1
MGGTEETVSTQYAPKMAGTVNWGTATVVGVFAGMLYGGSKEAAASVSKDAEVMLKLGSTPDKREQHRLMRDAMEKRFIRVTRGSIVGGVRLGMFTAEFYG
LQNLLAEKLGVHGIFNVVGAGSATAATFGLIMPGSLRWRARNVLLGLFMGAAFCFPLGWIHLKLVEKANEGSSGERGEAKSGVGATIERLEGNLKKKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63000 Mitochondrial import inner mem... Potri.015G078600
[exp]
0 1
AT1G44790 ChaC-like family protein (.1) Potri.005G176300
[exp]
4.24 0.6997
AT3G25120 Mitochondrial import inner mem... Potri.002G246000
[exp]
6.48 0.6973
AT2G35680 Phosphotyrosine protein phosph... Potri.002G136700
[exp]
11.53 0.6695
AT5G14105 unknown protein Potri.001G328100
[exp]
12.56 0.7149
AT1G31175 unknown protein Potri.015G121500
[exp]
15.49 0.6971
AT5G63670 SPT42 SPT4 homolog 2 (.1.2) Potri.010G255000
[exp]
17.88 0.6198
AT5G05670 signal recognition particle bi... Potri.002G020900
[exp]
22.58 0.6884
AT5G58575 unknown protein Potri.001G279700
[exp]
31.81 0.6575
AT5G59890 ADF4, ATADF4 actin depolymerizing factor 4 ... Potri.010G208500
[exp]
34.94 0.6287
AT5G25170 PPPDE putative thiol peptidase... Potri.006G261500
[exp]
35.32 0.6852

Potri.015G078600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.