Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50290 388 / 2e-136 unknown protein AT3G17350 133 / 6e-37 unknown protein AT1G10380 95 / 2e-22 Putative membrane lipoprotein (.1) AT1G11915 95 / 2e-22 unknown protein AT1G21240 45 / 3e-05 WAK3 wall associated kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G099800 [exp] 149 / 6e-43 AT3G17350 332 / 2e-114 unknown protein Potri.010G152900 [exp] 147 / 2e-42 AT3G17350 339 / 4e-117 unknown protein Potri.010G158500 [exp] 129 / 3e-35 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 125 / 9e-34 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 109 / 9e-28 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.010G040500 [exp] 104 / 7e-26 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.004G007400 [exp] 88 / 1e-19 AT1G11915 360 / 1e-124 unknown protein Potri.011G007900 [exp] 84 / 2e-18 AT1G11915 379 / 6e-132 unknown protein Potri.017G116900 [exp] 50 / 1e-06 AT1G66910 477 / 2e-160 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001236 [exp] 400 / 4e-141 AT5G50290 368 / 2e-128 unknown protein Lus10042105 [exp] 399 / 7e-141 AT5G50290 366 / 9e-128 unknown protein Lus10043098 [exp] 142 / 5e-40 AT3G17350 334 / 7e-115 unknown protein Lus10037078 [exp] 119 / 8e-31 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036906 [exp] 97 / 1e-23 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10036687 [exp] 95 / 1e-22 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037235 [exp] 92 / 3e-21 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10037236 [exp] 66 / 3e-13 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1) Lus10038443 [exp] 66 / 6e-12 AT1G11915 365 / 2e-126 unknown protein Lus10023362 [exp] 62 / 8e-11 AT1G11915 360 / 2e-124 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.015G078700.1 pacid=42775547 polypeptide=Potri.015G078700.1.p locus=Potri.015G078700 ID=Potri.015G078700.1.v4.1 annot-version=v4.1 ATGAGCACGCTCTTCTTAATCATCCTTTCAATTCTTTCATCTTTAGTCCCTCTGAGTTTTGCCAGTAATGTGCATGTCAATAACCCTTGCCGATCTTATT GCGGTAACATAACTATTGATTACCCTTTTGCACTCCAATATGGCTGTGGCCATCCAGGTTTCAGGGACCTCTTATTTTGCATGAATGATGTACTGATGTT TCATATAAGCTCAGGATCATACCGAGTGCTAGAAATAGACTATGCATACCAATCTGTCACAATCCACGAGCCTCACTTGTCAACCTGTGACACCCTTGTG CTAGGTGGCAAGGGTAATGGTTTCGCAGTCGAGCAATGGCGGTCTCCATACTTCAACCCGACCGCTGATAACGTGTTCATGCTAATAGGTTGCTCCGCTC AATCATCACTGTTCCAAGGATTCCCCGGGAAGCACCTGCCTTGTCGAAACGTTTCGGGTATGGGCTGCGAAGAGTACTATGGGTGCCCAGCATGGAGTCT AGCGGGCCGTGGACAAATGGGCTCGATGTTCGGGTCAGGTCCCCCAGAATGTTGTGCGGTGGCATTTGAGGCTATTAGGGCTATAAATCTCAGTAAACTT GATTGTGAAGGTTATAGTAGTGCTTATAGCCTTGCACCATTAAGGGTTGATGGGCCTAGTGAATGGTCTTTTGGGATCCGAGTGAAATATTCTGTTCAAG GGAACGAGTTCTGTAGAGCCTGCGAGGCAACTGGTGGAACATGCGGGTATGGCTCTAATGGGATTAGGCAGCTGTGCATGTGTGGAGACATGAATTCCAC GTCAAATTGTGACTCAGTTACCTCGGCAACAGATAGAAGAAGAGGGCACGGGTTGGTGACAGTACTAACAGCAATTTCTTTCAGTATATTAGCATGGATA TGA
AA sequence Show only first row Show all	>Potri.015G078700.1 pacid=42775547 polypeptide=Potri.015G078700.1.p locus=Potri.015G078700 ID=Potri.015G078700.1.v4.1 annot-version=v4.1 MSTLFLIILSILSSLVPLSFASNVHVNNPCRSYCGNITIDYPFALQYGCGHPGFRDLLFCMNDVLMFHISSGSYRVLEIDYAYQSVTIHEPHLSTCDTLV LGGKGNGFAVEQWRSPYFNPTADNVFMLIGCSAQSSLFQGFPGKHLPCRNVSGMGCEEYYGCPAWSLAGRGQMGSMFGSGPPECCAVAFEAIRAINLSKL DCEGYSSAYSLAPLRVDGPSEWSFGIRVKYSVQGNEFCRACEATGGTCGYGSNGIRQLCMCGDMNSTSNCDSVTSATDRRRGHGLVTVLTAISFSILAWI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50290			unknown protein		Potri.015G078700 [exp]	0	1
AT5G22580			Stress responsive A/B Barrel D...		Potri.004G187500 [exp]	2.00	0.9413
AT4G31980			unknown protein		Potri.013G146600 [exp]	7.48	0.9320
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.003G061300 [exp]	8.24	0.9033
					Potri.017G040750 [exp]	10.77	0.8548
AT1G14730			Cytochrome b561/ferric reducta...		Potri.010G102400 [exp]	10.86	0.9393
AT1G77700			Pathogenesis-related thaumatin...		Potri.002G087100 [exp]	13.07	0.9374
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050200 [exp]	13.22	0.9349
AT3G05620			Plant invertase/pectin methyle...		Potri.013G013200 [exp]	13.85	0.9259
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054700 [exp]	15.74	0.9363
					Potri.001G049700 [exp]	15.81	0.8936

Compare expression of checked genes

Potri.015G078700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.