Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17720 547 / 0 ATBBETA, ATB BETA Protein phosphatase 2A, regulatory subunit PR55 (.1.2) AT1G51690 516 / 3e-180 ATB ALPHA, ATBALPHA protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231000 [exp] 563 / 0 AT1G17720 831 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.018G055001 [exp] 551 / 0 AT1G17720 823 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.001G197300 [exp] 543 / 0 AT1G17720 861 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.003G034300 [exp] 541 / 0 AT1G17720 840 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001239 [exp] 655 / 0 AT1G17720 576 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10042101 [exp] 651 / 0 AT1G17720 570 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10037653 [exp] 549 / 0 AT1G17720 879 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10015635 [exp] 545 / 0 AT1G17720 878 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10012083 [exp] 382 / 2e-127 AT1G17720 669 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10007401 [exp] 277 / 2e-87 AT1G51690 460 / 7e-159 protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G079300.2 pacid=42775903 polypeptide=Potri.015G079300.2.p locus=Potri.015G079300 ID=Potri.015G079300.2.v4.1 annot-version=v4.1 ATGAGTTCCAGCTCTAGAGACTCCTTTTCCTCTCTTACTCCTCCTTCTCCTCCACTAGACTGGAAGTTCTCTCAAGTCTTCGGTGAAACAACTCCCGGTG AAGACCTTCAAGATGTTGATGTTGTATCTTCCATTGGATTCGAGAAGAGCGGTGATTACCTAGCTGTTGGAGATCGGGGTGGTCGTGTTGTAATTTTCCA AGCAAAACATGGCAAACATACTCCGAATTCATTCCTTAACCGAAACGAGCTGGAGCGGTTGGATTGCGCCTTTACAACACATCCTGAATATCAGTACAAG ACAGAGTTTCAGAGCCATGAACCCGAGTTTGATTACTTGAAGAGTATGGAGATCGAGGAGAAGATTAATAGAGTAAAATGGTGTTCCACTTCCAATGGAT CACTGTTTATCCTTTCAACCAATGATAAGACAATTAAATTATGGAAGGTTAGCGAAAAAAAGTTGAAAAAGGTAAGAGAAATGGAGCATCATTCAGTTGT GTGCTCAGAAAATGATCTTTTGGGTGAAGGAAGTTTCATGAGTGAGCTAGACAAACCACCTACCACTAATGGTTATAATCTCGACTGGGCAGAGAAGATA GCTAAGGACACTTTGTCATCTCAAGAAGTGCAAACCAAGATCACTCATACTGAAGAAGCCACTCGTGCAAATTGTCGGAAGGTGTATGCTCATGCTCATG ATTTTAATATCAACTCGATCTCAAATAATAGTGATGGTGAGACATTTATTTCCTCAGACGACCTTCGCATAAACTTATGGAACCTTGAGATCAGTGACCA GTGTTTCAATATCATTGACATGAAACCATCAAACATGGAGGATCTAACCGAGGTCATTACAGTGGCTGAATTCCACCCAATTCATTGTAATCTGCTAGCA TACAGCAGCTCAAGAGGATTTACTCGTCTAGTTGACATGCGTCAGTCAGCAATATGTGATCATAGTGCAAGAATATTACAAGATGCAGAATGTCGTGGGT CAAAATCATTCTTTACAGAGCTCATTGCATCTATCTCTGACATGAAGTTCACTTACGATGGGCAGCACATCTTAACTCGCGATTACATGAATTTAAAGCT GTGGGATATGCGTATGGATTCGTCACCAGTTGCTGTATTCAAGATCCATGAGCACCTGCGCCCTAAGTTAAGTGATTTATATAATGATGACTCCATATTC GATAAATTTGAGTGCTGCATCAGTGGAGATGGACTACATTTTGCAACTGGATCTTACAGCAATAATTTACGTATATTTTCACATGGTGTTGGAAATGAAG AAGGGATTACAATAGAAGCTAGCAAAAATCCAAACAGGAGATCAATACTCCATTCTACTTCAAGGCCAAGGAGATCATCCTTAAGCAACATGGCACGTGG ATTTTACCGGCAAGGACATGAAAATTACCGCTCAGGCAGCAATGAATTTTCCTGCAACTTAAGCTCCAAGCTGCTTCATCTGGCATGGCATCCAACAACA AACTTCATTGCCTGTGCTTCAGGAAATAGCTTGCTCATGTATCATGCCTAG
AA sequence Show only first row Show all	>Potri.015G079300.2 pacid=42775903 polypeptide=Potri.015G079300.2.p locus=Potri.015G079300 ID=Potri.015G079300.2.v4.1 annot-version=v4.1 MSSSSRDSFSSLTPPSPPLDWKFSQVFGETTPGEDLQDVDVVSSIGFEKSGDYLAVGDRGGRVVIFQAKHGKHTPNSFLNRNELERLDCAFTTHPEYQYK TEFQSHEPEFDYLKSMEIEEKINRVKWCSTSNGSLFILSTNDKTIKLWKVSEKKLKKVREMEHHSVVCSENDLLGEGSFMSELDKPPTTNGYNLDWAEKI AKDTLSSQEVQTKITHTEEATRANCRKVYAHAHDFNINSISNNSDGETFISSDDLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITVAEFHPIHCNLLA YSSSRGFTRLVDMRQSAICDHSARILQDAECRGSKSFFTELIASISDMKFTYDGQHILTRDYMNLKLWDMRMDSSPVAVFKIHEHLRPKLSDLYNDDSIF DKFECCISGDGLHFATGSYSNNLRIFSHGVGNEEGITIEASKNPNRRSILHSTSRPRRSSLSNMARGFYRQGHENYRSGSNEFSCNLSSKLLHLAWHPTT NFIACASGNSLLMYHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.015G079300 [exp]	0	1
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.005G146400 [exp]	2.44	0.8548
					Potri.018G145600 [exp]	5.38	0.8850
					Potri.018G138206 [exp]	7.21	0.8739
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	8.00	0.8423
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Potri.018G103700 [exp]	8.48	0.8329
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Potri.013G065700 [exp]	12.64	0.8345
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	14.14	0.8404
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.002G157200 [exp]	16.94	0.8357
AT2G47300			ribonuclease Ps (.2.3)		Potri.002G194100 [exp]	20.49	0.8209
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	23.49	0.8373

Compare expression of checked genes

Potri.015G079300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.