Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19100 706 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36280 499 / 5e-170 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36290 494 / 3e-168 CRT1 compromised recognition of TCV 1 (.1) AT5G50780 430 / 7e-141 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G24970 427 / 7e-141 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 389 / 2e-126 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2) AT4G36270 332 / 6e-107 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089000 [exp] 917 / 0 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.005G118400 [exp] 487 / 7e-165 AT4G36290 706 / 0.0 compromised recognition of TCV 1 (.1) Potri.015G100900 [exp] 432 / 2e-141 AT4G24970 773 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.012G102800 [exp] 431 / 4e-141 AT5G50780 769 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 416 / 9e-136 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.011G144500 [exp] 116 / 6e-27 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042100 [exp] 728 / 0 AT1G19100 667 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10039959 [exp] 676 / 0 AT1G19100 640 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10001240 [exp] 576 / 0 AT1G19100 532 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10014276 [exp] 473 / 3e-160 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10041578 [exp] 411 / 8e-135 AT4G24970 662 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10016745 [exp] 412 / 1e-134 AT4G24970 707 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10022438 [exp] 404 / 7e-132 AT4G24970 736 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10025978 [exp] 336 / 8e-109 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [poplar] [flax] His_Kinase_A PF13589 [poplar] [flax] HATPase_c_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.015G079400.8 pacid=42776232 polypeptide=Potri.015G079400.8.p locus=Potri.015G079400 ID=Potri.015G079400.8.v4.1 annot-version=v4.1 ATGGTTATGAAAGCTACTGAATTGGATAAAGATGTTGGGGATCGAGTGCAAGGGAACAACTGCCTTAGAGGCCAACTAGCTCAGCATCAGAAGTCTGTGA ACCATTCCAGAAGACAAGAATCTAAAGAAAATAAAAGCTCAAATGCCTTAAGTAGCGGTCAAAGTAATTCAAATGTATTAGAGCAGGGAAGATCTCCAGT AGATGAAAGTGGCACTTATTCTGAATTTATAAAATTTCCAGCACCACCTTGTCGTCAATTTTGGAAAGCTGGGGACTATGATGATGGGCCCAGTTCCAAG CTCACACTTCAAAATGGAAAAAATTATCTCCATGTCCACCCGATGTTTCTTCATTCAAATGCCACTTCACATAAGTGGGTTTTTGGTGCCATAGCAGAAC TGGTTGACAATGCAGTTGATGAGATCGAAAATGGGGCCTCTTTTGTCATTGTAGATAAAATCTCAAATCCAAGAGATGGAAGTCCTGCACTGTTAATTCA AGATGATGGTGGTGGAATGGATCCCGAAGCAATCCGGCGATGCATGAGCTTTGGGTTTTCAGATAAAAAATCCAAATCAGCAATTGGACAATATGGTAAT GGCTTCAAGACCAGCACTATGAGACTTGGGGCAGATGCTATTGTCTTCAGCCGCCATGCAGATGATAGGGTATTGACTCAAAGCATTGGTCTCCTCTCTT TCACATTTTTGACACAAACAGGACATGACAGAATAGTAGTGCCAATGGTGGATTATGAGCTTAACACAGCTGGTAATTTGGAAATTCTAGATCGATATGG GAAAGAATACTTTATGTCCAACCTTTCCTTGCTGCTGCAATGGTCTCCATATTCAACAGAAGCAGAGCTACTGAAACAATTTGAAGACATTGGATTGCAT GGTACTAAAGTGATTGTTTATAATTTGTGGTTCAATGATGATGGGAATGTGGAGCTAGACTTCGATACAGATCCTGAGGATATTCGTATTAATGGGGATA TAAAAGAAGTGCAGACACGCCCTGCTTGGAGGACAGTAAATGAAGAACACATTTCCAACCGACTACGATATTCTTTGAGGGCTTATTTATCCATTTTATA CCTGCGAATACCTGAAAATTTCACAATAGTATTGCGGGGGGGATTTGTCAAGCATCACAATCTTGCCCTTGATCTCAAATTTCAAGAATTTATCGTATAT AGACCCCAAAGCAGTGGATGTATAAAGGGTGAACTGTTAACTACTATTGGGTTTTTAAAAGAAGCTCCACAAGTTACCGTTCATGGTTTTAACATCTACC ACAAGAACCGTCTTATACTACCATTTTGGCCCATTGTGAACTATGGAAATAACAGTAGAAGTAGAGGAGTAGTTGGTGTTCTGGAAGCAAATTTTGTTGA GCCCACTCATGACAAACAAGATTTTGAGAGAACTTCCTTGTTTCAGAAGCTTGAAGTTCGGTTGAAGGAGATGACATGGGAGTACTGGGATTATCATTGC GGTCTAATTGGTTACCAGGTCATAAAAAAGCTTCGACCAACCGAGCCTCCACCAGATTCACCTCTTGGCATCTCAACTAGTGACACATTGAAACATGGAT TATCTTCAAAGAGGAAGGAACATAGTGATTTAGACAAACTTGAAAGCATAAAACGGCAGGCAGGGACTGGGGCCAATGCATTTTTGTCGGGGCACGGTTT TGAAACAGAGGTTGTCAGTGATATTAAAAATAAGCTGGAAGATCAGGATGTTGTAAACTTGATTCAAGTAAACAAGAATTTCCGTGCAAAATGCTTGGAC TACAAGAAGAGGACGGAAGACCTTGATTTGAAGGTTACACGGCTAAGAAGTGAACTGGGACAAGTTCGAACGGAGTATGAACAGCTTATGGCTGAATTAA CATCATAA
AA sequence Show only first row Show all	>Potri.015G079400.8 pacid=42776232 polypeptide=Potri.015G079400.8.p locus=Potri.015G079400 ID=Potri.015G079400.8.v4.1 annot-version=v4.1 MVMKATELDKDVGDRVQGNNCLRGQLAQHQKSVNHSRRQESKENKSSNALSSGQSNSNVLEQGRSPVDESGTYSEFIKFPAPPCRQFWKAGDYDDGPSSK LTLQNGKNYLHVHPMFLHSNATSHKWVFGAIAELVDNAVDEIENGASFVIVDKISNPRDGSPALLIQDDGGGMDPEAIRRCMSFGFSDKKSKSAIGQYGN GFKTSTMRLGADAIVFSRHADDRVLTQSIGLLSFTFLTQTGHDRIVVPMVDYELNTAGNLEILDRYGKEYFMSNLSLLLQWSPYSTEAELLKQFEDIGLH GTKVIVYNLWFNDDGNVELDFDTDPEDIRINGDIKEVQTRPAWRTVNEEHISNRLRYSLRAYLSILYLRIPENFTIVLRGGFVKHHNLALDLKFQEFIVY RPQSSGCIKGELLTTIGFLKEAPQVTVHGFNIYHKNRLILPFWPIVNYGNNSRSRGVVGVLEANFVEPTHDKQDFERTSLFQKLEVRLKEMTWEYWDYHC GLIGYQVIKKLRPTEPPPDSPLGISTSDTLKHGLSSKRKEHSDLDKLESIKRQAGTGANAFLSGHGFETEVVSDIKNKLEDQDVVNLIQVNKNFRAKCLD YKKRTEDLDLKVTRLRSELGQVRTEYEQLMAELTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.015G079400 [exp]	0	1
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	2.64	0.8588
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	3.16	0.8580
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Potri.006G116000 [exp]	5.19	0.8443
AT4G24900			unknown protein		Potri.012G098000 [exp]	6.00	0.8249
AT2G40650			PRP38 family protein (.1)		Potri.005G021600 [exp]	8.36	0.8154
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	9.79	0.8435
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Potri.016G144200 [exp]	10.95	0.7835
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.018G047500 [exp]	13.26	0.8141
					Potri.010G120000 [exp]	15.65	0.6790
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	19.74	0.8136

Compare expression of checked genes

Potri.015G079400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.