Plant FIBer expression Database

Potri.015G079600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G07090 460 / 5e-166 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2)
AT5G58420 459 / 6e-166 Ribosomal protein S4 (RPS4A) family protein (.1)
AT2G17360 458 / 2e-165 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G033700
[exp]
484 / 1e-175 AT5G07090 468 / 3e-169 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2)
Potri.016G124100
[exp]
483 / 2e-175 AT5G58420 458 / 2e-165 Ribosomal protein S4 (RPS4A) family protein (.1)
Potri.013G011000
[exp]
481 / 1e-174 AT2G17360 452 / 6e-163 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2)
Potri.006G103700
[exp]
481 / 2e-174 AT5G58420 465 / 3e-168 Ribosomal protein S4 (RPS4A) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004272
[exp]
447 / 7e-161 AT5G58420 499 / 0.0 Ribosomal protein S4 (RPS4A) family protein (.1)
Lus10019239
[exp]
447 / 6e-152 AT2G22660 747 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0107 KOW PF00467 KOW KOW motif
CL0021 OB PF00900 Ribosomal_S4e Ribosomal family S4e
CL0492 S4 PF01479 S4 S4 domain
CL0492 PF08071 RS4NT RS4NT (NUC023) domain
CL0492 PF16121 40S_S4_C 40S ribosomal protein S4 C-terminus
Representative CDS sequence
>Potri.015G079600.1 pacid=42776580 polypeptide=Potri.015G079600.1.p locus=Potri.015G079600 ID=Potri.015G079600.1.v4.1 annot-version=v4.1
ATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAACATTGGATGCTTGACAAACTTGGTGGTGCATTTGCACCCAAGCCATCTTCTG
GACCCCATAAGTCTAGAGAATGCTTGCCTCTCATTCTTATTCTGCGAAACAGGCTAAAGTATGCTCTCACATACCGTGAAGTAATTGCCATTTTGATGCA
GAGACATGTCTTTGTTGATGGCAAGGTCAGGACAGATAAAACTTACCCGTCTGGTTTCATGGATGTTGTATCAATCCCAAAGACAAATGAGAGCTTCCGA
CTCCTCTATGACACCAAAGGCCGCTTCCGTCTCCACTCCCTCAGAGAAGATGAGGCCAAGTTTAAGCTTTGCAAAGTTCGGTCTGTTCAGTTTGGGCAGA
AAGGCATCCCTTACCTGAACACCTATGATGGGCGCACTATCCGCTACCCAGACCCACTCATCAAGGCCAATGACACCATCAAGCTCGACCTAGAGAATTA
CAAGATAGTAGACTACATCAAGTTTGATGTGGGGAATGTTGTAATGGTCACTGGAGGAAGGAACAGAGGCCGAGTTGGAGTAATCAAGAACAGGGAGAAG
CATAAGGGAAGCTTTGAGACAATTCATGTTCAAGATGCCACTGGCCATGAGTTCGCCACCCGCCTGGGCAATGTGTTCACCATTGGAAAGGGCACCAAAC
CATGGGTTTCTCTTCCCAAGGGCAAGGGTATTAAGTTGTCTATCATTGAGGAGGCTAAAAAGAGGCTTGCAGCATCCCAAAATGCTGCATGA
AA sequence
>Potri.015G079600.1 pacid=42776580 polypeptide=Potri.015G079600.1.p locus=Potri.015G079600 ID=Potri.015G079600.1.v4.1 annot-version=v4.1
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVFVDGKVRTDKTYPSGFMDVVSIPKTNESFR
LLYDTKGRFRLHSLREDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENYKIVDYIKFDVGNVVMVTGGRNRGRVGVIKNREK
HKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEAKKRLAASQNAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G07090 Ribosomal protein S4 (RPS4A) f... Potri.015G079600
[exp]
0 1
AT3G53020 RPL24B, STV1 SHORT VALVE1, Ribosomal protei... Potri.012G139500
[exp]
2.44 0.9598
AT1G74270 Ribosomal protein L35Ae family... Potri.008G059400
[exp]
2.82 0.9570
AT5G58420 Ribosomal protein S4 (RPS4A) f... Potri.006G103700
[exp]
9.64 0.9394
AT3G04400 EMB2171 embryo defective 2171, Ribosom... Potri.003G136400
[exp]
10.90 0.9208
AT1G14320 RPL10A, RPL10, ... SUPPRESSOR OF ACAULIS 52, ribo... Potri.013G159301
[exp]
14.45 0.9172
AT1G72370 AP40, RPSAA, RP... 40s ribosomal protein SA (.1.2... Potri.003G071200
[exp]
15.81 0.9332
AT5G09500 Ribosomal protein S19 family p... Potri.005G219700
[exp]
16.24 0.9358
AT4G14320 Zinc-binding ribosomal protein... Potri.005G092500
[exp]
22.84 0.9328
AT1G72550 tRNA synthetase beta subunit f... Potri.018G070200
[exp]
22.97 0.8476
AT3G20000 TOM40 translocase of the outer mitoc... Potri.014G004100
[exp]
24.24 0.9159

Potri.015G079600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.