Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63050 337 / 6e-115 EMB2759 embryo defective 2759 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088600 [exp] 578 / 0 AT5G63050 334 / 7e-114 embryo defective 2759 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001245 [exp] 329 / 1e-110 AT5G63050 272 / 3e-88 embryo defective 2759 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G079700.1 pacid=42776636 polypeptide=Potri.015G079700.1.p locus=Potri.015G079700 ID=Potri.015G079700.1.v4.1 annot-version=v4.1 ATGGCATTGGTGACCCATCAGATGCAGGGTTCTTATGCAACATTTCCTTCGAGGCCTTTATCTTGGAGCAAAGGGGTGAAGTTGAAGCAACGTGTAACAG AACTTCAGATGGTAGGGAGAACAGATATGTGTTTTTCAGTAAAACACAGTCTTCGTTTAAGTGCAGGGGCTTTCTCACATGGACCTAAAGTAAAGCTCTT GAGAGTTTCAGCTTTTAAAGGCAGTGCACAAAATGATGAATCAGGAGGCAGAGCTAATGGATCCAAAGTTTCAAAAAAATCTGTTAAACTTTCTTATGTG CCAAAAGAAAGTGGGGAGACCATGATGGACTCTTCAAAGGTGCATAGTATTCCAGTTTCCTATACTTCTGAAGCAGATGAAAGGATTGCAGGATCCCCTG CTATTAATAAATTATTCAAGAAATGGCTCAGCATGTTGCGCACACAATCTCCAAGTCAAGTTGCAGATGAGATTCTGGAAGAAGGACCTCCTCCAAGGGA AGAATTGCAACAAGCTCAAAATACCACCCAAAATAAGGAGAGAGTTGATAATGTAAAGTCAGTTTGGTATCACTTCCTGAATCTGGATGCAACAATAAAG ATACCCATACTGACATTCATTCCTTTGTTCCTGGCCGTCAATGTGGTGTATGGAGCTGGAGTGTCAAAGGAATTGACTCCATTGTGGATTTTGGGTCCCC TTATTGTTGCTTTCTACATCAAGTTACTCCAGGGCTTGTGGGCACTCTATGTTTTCAGCTTTAGGCAGACAATTAAAGTTATCAAAAATGTACCTACCTA CTATCTCGTGGCCTACGGCTATATCAGACAAGGGAAGCTCAAAGAAGACATACAAGCTCGTGTGTTGCAACCTCTGCAAAGCTTTAAGAACTTGGACCGC AAAGAGTTTTCAAGAAAAAAGATGATGGAATTGCAAGAGTGGTGTATGGAGAAGTACCTAGATTATGTGGAATCAATATGGCCCTACTATTGTAGGGCAA TCAGGTTTCTAAAGAGGGCTAATCTGATTTAG
AA sequence Show only first row Show all	>Potri.015G079700.1 pacid=42776636 polypeptide=Potri.015G079700.1.p locus=Potri.015G079700 ID=Potri.015G079700.1.v4.1 annot-version=v4.1 MALVTHQMQGSYATFPSRPLSWSKGVKLKQRVTELQMVGRTDMCFSVKHSLRLSAGAFSHGPKVKLLRVSAFKGSAQNDESGGRANGSKVSKKSVKLSYV PKESGETMMDSSKVHSIPVSYTSEADERIAGSPAINKLFKKWLSMLRTQSPSQVADEILEEGPPPREELQQAQNTTQNKERVDNVKSVWYHFLNLDATIK IPILTFIPLFLAVNVVYGAGVSKELTPLWILGPLIVAFYIKLLQGLWALYVFSFRQTIKVIKNVPTYYLVAYGYIRQGKLKEDIQARVLQPLQSFKNLDR KEFSRKKMMELQEWCMEKYLDYVESIWPYYCRAIRFLKRANLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Potri.015G079700 [exp]	0	1
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.003G052700 [exp]	1.73	0.9587
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Potri.007G006300 [exp]	5.65	0.9340
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Potri.005G095300 [exp]	7.74	0.9457	Pt-MST2.1
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Potri.005G224000 [exp]	9.16	0.9364
AT4G22720			Actin-like ATPase superfamily ...		Potri.017G029200 [exp]	9.59	0.9380
AT3G56010			unknown protein		Potri.010G186800 [exp]	11.22	0.9535
AT5G60840			unknown protein		Potri.012G065400 [exp]	12.64	0.9234
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.008G012500 [exp]	14.79	0.9507	NAP7.2
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	15.87	0.9474
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	18.16	0.9502

Compare expression of checked genes

Potri.015G079700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.