Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24680 519 / 8e-159 MOS1 modifier of snc1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088500 [exp] 1937 / 0 AT4G24680 532 / 2e-163 modifier of snc1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001246 [exp] 550 / 2e-169 AT4G24680 659 / 0.0 modifier of snc1 (.1) Lus10042094 [exp] 538 / 9e-165 AT4G24680 656 / 0.0 modifier of snc1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G079800.5 pacid=42776295 polypeptide=Potri.015G079800.5.p locus=Potri.015G079800 ID=Potri.015G079800.5.v4.1 annot-version=v4.1 ATGACATCAAGTATGTTGACCGGAGATCGCAGATATGCTCCTGCAAGAAGAGGTGGTGGCATGACAAGTTTGGGGAAAATCGCTGTTCCCAAACCAATAA ACCTACCCAGCCAAAGGTTAGAAAATCATGGTCTGGACCCGAATGTCGAAATTGTGCCCAAGGGTACCTATAGCTGGGGAACCAGATCATCTTCTTCCAC TCCTAATGCCTGGGGTTCTTCAACGCTGTCTCCAAATACTGATGGTGGTAGTGGTTCACCAAGCCATCTGAGTGGTCGCCCCTCATCTGGTGGAAGTGGC ACTCGACCATCAACTGCAGGCAGTGATAGAACCCACGATCCCATTGCTAGTGCATGGGGTACAAATTCTAGGCCATCTTCAGCATCAGGAGCTTTGACAT CGAATCAAACATCATTTACATCATTGCGTCCTTGCAGTGCAGAAACAAGACCTGGTAGCTCGCAGTTATCCCGTTTCGCTGAGCCCTTATCTGATAATTC AGTTGCTTGGGTTGCAACTGGAACGGCAGAAAAGTTGGGAGGGACATCCTCTAAGAATGAGGGGTTTTCTTTGACTTCAGGAGATTTTCCAACACTTGGT TCAGAGAAAGAAAACTCTGGAAAAAACACGGAGTCCCAAGACCATGATTCTTACAGTCGTCCTGGTTCATCATCGGGTGGAGTAGCTCCAGGGAAAGAGA GTGCTGAAAATTCTGCAGGTGATGCTTCTATAAACACAAATGCAAAGATGGAACCTGCAAATTCTTGGAGAAGAGAGAATCCCATGTGTGGTGAAGATGG GTTGAGGCCTAGCATGGAGAAGTGGCACCCTGATCACCAATTGTATCCTAATTCTAATATTCGCCCACAGAATTATGATTCTTGGCATGGCCCCCCTGTA AATAATCCTCCAGGTGGTGTTTGGTACAGAGGACCTCCAGGTGGTCCACCTTTTGCACCGCCAATAGCACCTGGTGGCTTTCCCATGGAGCCATTTCCTT ATTACTGTCCGCAGATTCCACCTACTGCTCTTGCCAACCCACAACAAGGTCCTCCACCAGGACCTGGACCAAGAGGACCCCATCCAACAAATGGAGATAT GTACAGACCCCACATGCATGATGCTTTTATGCGTCCAGGCATGCCATTTCGTCCTGGCTTTTATCCTGGACCAGTTCCTTACGAGGGCTATTACGCTTCT CACATGGGCTACTGCAACTCCAATGATCGAGATATTCAGTTTATGGGAATGGCAGTGGGTCCTGCTCCATATAACAGATTTTCAGGTCAAAATGCTCCTG ATCCTGCAAATTCCCATGGAAGGCCAGCTGGATATGGTCCTCCTAGTGGTCACACAATGGTTCCAGAACAACTCGAATCTGGTCATCCACAAGATACTCG TGGACCATTCAAAGTCCTTCTGAAGCAGCATGATGGTTTAGAGGGAAAAGACAAAGAACAGAAGTGGGATGACATGATGGCAACCAATGCATCTTATCCT GGGAAGGCAGGCCATCAAAGAAAGTCATCATGGGAGAATGGTTGGAGTGCAGATGAGAAGAACAATAAAGAGAGGAATACAAGAAGAATTGGCGAAGAAT TTTCTTCCGAGGCCAATGGCAACCAAGGAGGTGTTAAAGTAAAACCTCTTGAACATGTAGGAAATTGGAAGGCAGCTGATGACAGTTCAGTTAAGAAACT GGAACCTGCAGCATCTGGTTTTCCAGAAGTTTCAACCGCCCCAAAGGATCCTAGTCTAATCAGGAAAATAGAAGGTTTAAATGCGAAGGCCAGGGCCTCT GATGGAAGGCAAGAAGTTAAATTTTCTTCCAGTAGGGAGGAGCATAAGAATAGATTACAAGGTGGTAATGCCAGGTCTAATCATTCTGCAAATGAAGCTG GTAATAGTTATGCATCTCTTGAAAGAACTCATGTCTGTGGCATTAGCGACACTGCTTCCCATGAAGACCGCATTTCTGCTGCAGATAAGAGCCATGAGGT AACAGATGCTATCGGAACAGCAAGCTCCAGGAGATCAACTCATGGTATGCATGGGAGACCTGATCATCATGGTAAAGGGAGATTCAGTACCCAAGAGGCT GAAGGGTGGCGGAGAAGATCTCATGTTGCAGACTTGTCGAGTGTATTGTCGTCTTCTCATTTTGAAAGTTCTAATGTTCATAGGCAAGACCATAGTCCTG CAGAGGCAACTGAAAAGTCTGGGTCATATCATCAAGGGAAGGATGATGGAGAATCTGTGCTACCTCACCCTGATCCCAGTGATAGCCAGGTGCAACGTGC TAAGATGAAAGAGCTAGCCATTCAACGGGTTAAACAACGCGAGAAGGAAGAGGAGGAACGTGCTAGAGATCAAAAGGCCAAGGCACTTGCAAAATTGGCA GAGTTGAATAAGCGGACTAAGGCAGCGGAGAGTTTAAGCGAGGTTCTGCCAGGGATGCCGAAGGCTACCCACAAGGAATCTGTTGTGATACATGACCAAT TGGAGCCATTGCAACAGGATGTTAGTCGTGCTGATGGTGATCACCCTGATAATGCCCCACAGACTTATGACAATAGAGCTTCTAAGCAGAAGCGTGTGAG CTACAGACAAAAGCAGAATGGTCCCTTGGAAAAGACTTGCAATGATAAGTTAATGACTTCTATAATTGAGGCACCAAAAAATGTTACTGATGTAGCAGCC AATGCTCCTGTTTCTATCGAGGGTGCAACTGAAATGACCACAAGCCCTGAATCGACTTTGCCCATCAACCCAACTGCCACGACCGAGTCTTCAGTACATC ATGGTAGAAGAAAGAACAGAAATGGAAAGAACAAGTACAAAGTGGAGGAGGCATCATCTATGGCAGTAGTTGTAACGCCAACCCTATCAAAAGAAATAAC TGCTTTAGACATTTCAGTTGAAAGTAGCAAGTCCAAGGCTTCTGAATCTGTGTCAGATCCAAGCTCCCAGACTGATTCTAGAGATGGAAATCAGTCTTTG GATCATCGCACATCATCACCAAATGAAGAAGTTCAAGGCAGAGTAAATAATCAGTGGAAATCTCAATATTCTCGCAGGATGCCGAGGAATCCACAAGCTA ATAAATCAACTGAGAAATTCCAAAGTGGTGATGCTGTTATCTGGGCTCCTGTGCGGTCACACAATAAAATTGAGGCTACTGATGAAGCCAGTCAGAAGAC TCTGGCTGATGCCATTAGTGAACCCATGAAGAGTGATCAGCAAGTGCAGAATAATACAAGAAATAAACGGGCAGAAATGGAAAGATACATTCCAAAGTCT GTAGCCAAAGAAATGGCTCAGCAAGGAAGTAGTCCCCATTCAGCGGCGCCATTAATCAATCAGATTACTCCAGATGAGACTGCTGGAAGACCTGAATCTC GTTCTCTGGGCAATGAAAGTTCTCAAAGCCCTGCCACAGGTATGGGAAAGGTAGTATCCATTTTAGAATCTAAGAATGGGGATGGCAGGCAAAATAAGTC AGGAAAAAGGAATGGATCATGGCGCCAACGGGGTTCGTCTGAATCAACTATGTTTTTTACAAGTAAAAATGTTCAAAAATCAATTGAGCATCAAGTCCAG AAACCTGATGTAAGTTCAGTGAAAGAGCAACTGGGTCATTATGATGAATGGAGCGACTCTGATGGTTGGAACATTCCTGAAAAATCTGAGGTGCCCATCA CTGTCCCTGCTATAAAAGATCATGGTGCAACAGCCAGAGCTAGGCGGCCATCATACAGGGGACATAAAAGTAGCCATGATCCTGATGAGAGGAGAATTCA TACTGGGGACGCTGAAAAGGTTCATGTCCAAACCTTAGGTTCAGAGATGCATCAAGCAGACTCAGCTGCAACTTCAAAAGAAAATCGTGCTGTTGGGGAA CGACCAGCATCTCATTGGCAACCCAAATCCCAGGCAATTTCAGCAACTACTAATCCAGGAAGCAGGGCCAGTGGTGGTCAGAACACAGGCTCTGAAGTTG GTAGGGGTAATAAAAAGGATTCCACTTCTCAAAATGGTATGCCAGTTCTGCCTCAACCTGACAAGGATATTGCTGCAGAGGCCCAGTCCCATCCTGATGG CTCTCTGTCTGCAAGGAGCAATTTGGAAGAAGATCCTAGCACTGGGCATCAAGAGGTTAAGAAGGAAAGGAAGATAGCATCACATAAAGGACATCCGGCT GAACCATCTCCTTTGAATATGGATTTTCAACAACGGGTGTCTTCAGGGTTCCGAAAAAATGGAAACCAAAACAGCCGCTTTGGCAGAGAGCATGATTCTC GTGGTGGCGAGTGGAGTGGTCCTGGGAAAGATAACGAGCACCATAACCGTGAAAGGCAGAGACAGAATTCACATTATGAGTACCAGCCAGTAGGGCCTCA ATATAATAACAAAGCTAACAATTATGAATCTTCAAAAGATGGTTCTCATAATTCTGTTGCAAGGTCCAGGGAGAGAGGTCAGAGTCACTCAAGGCGTGGT GGGGGGAATTCTCATGGGCGGCAACCTGGTGGTGCTCGAGGTGATGCCAATTATGATTAG
AA sequence Show only first row Show all	>Potri.015G079800.5 pacid=42776295 polypeptide=Potri.015G079800.5.p locus=Potri.015G079800 ID=Potri.015G079800.5.v4.1 annot-version=v4.1 MTSSMLTGDRRYAPARRGGGMTSLGKIAVPKPINLPSQRLENHGLDPNVEIVPKGTYSWGTRSSSSTPNAWGSSTLSPNTDGGSGSPSHLSGRPSSGGSG TRPSTAGSDRTHDPIASAWGTNSRPSSASGALTSNQTSFTSLRPCSAETRPGSSQLSRFAEPLSDNSVAWVATGTAEKLGGTSSKNEGFSLTSGDFPTLG SEKENSGKNTESQDHDSYSRPGSSSGGVAPGKESAENSAGDASINTNAKMEPANSWRRENPMCGEDGLRPSMEKWHPDHQLYPNSNIRPQNYDSWHGPPV NNPPGGVWYRGPPGGPPFAPPIAPGGFPMEPFPYYCPQIPPTALANPQQGPPPGPGPRGPHPTNGDMYRPHMHDAFMRPGMPFRPGFYPGPVPYEGYYAS HMGYCNSNDRDIQFMGMAVGPAPYNRFSGQNAPDPANSHGRPAGYGPPSGHTMVPEQLESGHPQDTRGPFKVLLKQHDGLEGKDKEQKWDDMMATNASYP GKAGHQRKSSWENGWSADEKNNKERNTRRIGEEFSSEANGNQGGVKVKPLEHVGNWKAADDSSVKKLEPAASGFPEVSTAPKDPSLIRKIEGLNAKARAS DGRQEVKFSSSREEHKNRLQGGNARSNHSANEAGNSYASLERTHVCGISDTASHEDRISAADKSHEVTDAIGTASSRRSTHGMHGRPDHHGKGRFSTQEA EGWRRRSHVADLSSVLSSSHFESSNVHRQDHSPAEATEKSGSYHQGKDDGESVLPHPDPSDSQVQRAKMKELAIQRVKQREKEEEERARDQKAKALAKLA ELNKRTKAAESLSEVLPGMPKATHKESVVIHDQLEPLQQDVSRADGDHPDNAPQTYDNRASKQKRVSYRQKQNGPLEKTCNDKLMTSIIEAPKNVTDVAA NAPVSIEGATEMTTSPESTLPINPTATTESSVHHGRRKNRNGKNKYKVEEASSMAVVVTPTLSKEITALDISVESSKSKASESVSDPSSQTDSRDGNQSL DHRTSSPNEEVQGRVNNQWKSQYSRRMPRNPQANKSTEKFQSGDAVIWAPVRSHNKIEATDEASQKTLADAISEPMKSDQQVQNNTRNKRAEMERYIPKS VAKEMAQQGSSPHSAAPLINQITPDETAGRPESRSLGNESSQSPATGMGKVVSILESKNGDGRQNKSGKRNGSWRQRGSSESTMFFTSKNVQKSIEHQVQ KPDVSSVKEQLGHYDEWSDSDGWNIPEKSEVPITVPAIKDHGATARARRPSYRGHKSSHDPDERRIHTGDAEKVHVQTLGSEMHQADSAATSKENRAVGE RPASHWQPKSQAISATTNPGSRASGGQNTGSEVGRGNKKDSTSQNGMPVLPQPDKDIAAEAQSHPDGSLSARSNLEEDPSTGHQEVKKERKIASHKGHPA EPSPLNMDFQQRVSSGFRKNGNQNSRFGREHDSRGGEWSGPGKDNEHHNRERQRQNSHYEYQPVGPQYNNKANNYESSKDGSHNSVARSRERGQSHSRRG GGNSHGRQPGGARGDANYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.015G079800 [exp]	0	1
AT3G50370			unknown protein		Potri.005G137700 [exp]	1.41	0.9309
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	2.00	0.9235
AT5G25060			RNA recognition motif (RRM)-co...		Potri.006G265700 [exp]	3.00	0.8759
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.014G086500 [exp]	3.46	0.9025
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Potri.015G110066 [exp]	6.24	0.8706
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	7.74	0.8846	HAF902
AT2G25320			TRAF-like family protein (.1)		Potri.018G025600 [exp]	8.24	0.8636
AT5G11700			unknown protein		Potri.006G234500 [exp]	10.00	0.8603
AT3G09850			D111/G-patch domain-containing...		Potri.006G189501 [exp]	11.83	0.8519
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.012G088500 [exp]	12.44	0.8499

Compare expression of checked genes

Potri.015G079800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.