Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19180 276 / 5e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 111 / 4e-26 GDA1/CD39 nucleoside phosphatase family protein (.1) AT2G02970 110 / 2e-25 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 91 / 2e-19 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT1G14230 86 / 2e-17 GDA1/CD39 nucleoside phosphatase family protein (.1) AT3G04080 71 / 7e-13 ATAPY1 apyrase 1 (.1) AT5G18280 69 / 4e-12 ATAPY2 apyrase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236900 [exp] 279 / 6e-85 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 98 / 2e-21 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031200 [exp] 90 / 5e-19 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.009G157500 [exp] 87 / 6e-18 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.008G086400 [exp] 85 / 3e-17 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031000 [exp] 82 / 3e-16 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.013G053500 [exp] 81 / 7e-16 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.013G053700 [exp] 63 / 1e-10 AT5G18280 300 / 2e-98 apyrase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027686 [exp] 457 / 3e-156 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10039953 [exp] 422 / 2e-143 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 294 / 3e-90 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 292 / 1e-89 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 282 / 2e-84 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10035695 [exp] 217 / 3e-62 AT4G19180 660 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030470 [exp] 111 / 8e-26 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 103 / 3e-23 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10042528 [exp] 77 / 2e-14 AT5G18280 684 / 0.0 apyrase 2 (.1.2) Lus10006546 [exp] 76 / 2e-14 AT5G18280 647 / 0.0 apyrase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF01150 [poplar] [flax] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Potri.015G079900.1 pacid=42776010 polypeptide=Potri.015G079900.1.p locus=Potri.015G079900 ID=Potri.015G079900.1.v4.1 annot-version=v4.1 ATGGGTTTTTCTCATTATAAATGGATTTTGAAAATATGTGGAGTTTGTCTAGTGATTTTGTTGCTGCTGCTTGGTGTTTATTTTGCATCTAATAAAGCTG GGAAAGCTGTAGTGAAGAGTGGTTTTTATCATTATACGGTTGTTGTGGATTGTGGAAGCACTGGGACGCGAGTTAATGTGTATAAATGGTGGAAACCAGC AAGTTTAAGTAATTGGGATTTGCCAATTTTAGTGCATTCTTATCCTGACAATTCAACTCAGAGTCTGTCTAGGGGAAGTTCTTGCAAGTATCATTGTGTG CAAACAGAGCCAGGTTTAGATAAGTTTGTTGGTAACTCCACGGGAGTGAGGCTGTCGTTAGAACCATTGATCCTATGGGCAGAACAGTGGGTGCCTCGTG AAAGACATGGAGACACTCCCATTTTTGTCTTGGCTACTGCTGGACTGAGGAGGTTGCTAATTGAGGATGCTAGGCAGGTTTTGGATGACGTGGAGGATGT TGTTAACGAACACTCATTTGTTTCTAAGAAAAGTTGGATAAGGGTCTTGAGTGGGAAGGAAGAAGCGTATTATGGTTGGGTGGCTTTGAACTATAAAATG GGGAGTCTAGGGAATTCCTCAATAGGGCCTACGTTAGGACTTCTTGATTTGGGAGGTTCATCGTTGCAAGTTGTAATGGAAGTGCATGATGGTGGAAGAA ATGATGCTAATTTGATAAGATCAAAGATTGGATTGGTTGAACATTATATTTTAGCATTCTCATTATCATCATTTGGTTTGAACGAGGCATTTGATAGGAC AGTTGCCATGCTTGGTCAGGTCCAGCCAGGTGGAGGAGGCAATAATGAAAGATATGAAGTTAGGCATCCTTGTCTTGGTTTTGGTTTTCAGCGAAATTAT ACTTGCTATGTCTGTGATGGGATAAATGTCCCTTATCAAAAGAATTTGAGCATTCAAACGCATAAAAGTGAATTTACTAATACTCAACTGGTTGGAGACC CAGATTGGGAGATATGCAAAGGGATTGCAAGGGCTGCTGCTCTCAACTTAAGCAGTTTGGATTGGTCACAGCCAACTGATCTCAATAATTGCAAAACTGG CCTGTCTTCATATGGTAGTGACACTCTAAATTTTATAGCTGGAACCCACCCCTCAAGACGATTTCATGCTTTATCTGGATTTTTTGCTGTTTACAACATG TTAGATCTGGCTCCAATAGCTAATTTGACTAAGATTTGGGAGAAGGGTCAGCAGATGTGTTCAAAATCATGGCCTGACTCGAGCAACACTTCTGGAAACC AAAACAACCTTGGCAAATATTGTTTCCGGGTGCCTTATATGGCATCGCTCATTGAGGATGCTTTGTGTCTTGGTGATAAAGAAATAGTGTTTGGTCCTGG AGATCTATCTTGGACTTTAGGAGCTTCACTAGTTGAAGCGGAGAAACCATGGCCAAGCTCTACCGAAACAACCATTTTATCCCTGAAAAGTAAGGAGGTT CTATATTCCTCCGTCCTCTTGTTCCTTCTACTTCTGTTTATTTCATTTATTGTTTACTATAAACAAATAAAGTTGCCTATGACGGGCAAGAAGATTCCTG CTGTCAGACTATCTTTGCCATCTTATGTTCATCCTAAACTCCGTCCGAACTAA
AA sequence Show only first row Show all	>Potri.015G079900.1 pacid=42776010 polypeptide=Potri.015G079900.1.p locus=Potri.015G079900 ID=Potri.015G079900.1.v4.1 annot-version=v4.1 MGFSHYKWILKICGVCLVILLLLLGVYFASNKAGKAVVKSGFYHYTVVVDCGSTGTRVNVYKWWKPASLSNWDLPILVHSYPDNSTQSLSRGSSCKYHCV QTEPGLDKFVGNSTGVRLSLEPLILWAEQWVPRERHGDTPIFVLATAGLRRLLIEDARQVLDDVEDVVNEHSFVSKKSWIRVLSGKEEAYYGWVALNYKM GSLGNSSIGPTLGLLDLGGSSLQVVMEVHDGGRNDANLIRSKIGLVEHYILAFSLSSFGLNEAFDRTVAMLGQVQPGGGGNNERYEVRHPCLGFGFQRNY TCYVCDGINVPYQKNLSIQTHKSEFTNTQLVGDPDWEICKGIARAAALNLSSLDWSQPTDLNNCKTGLSSYGSDTLNFIAGTHPSRRFHALSGFFAVYNM LDLAPIANLTKIWEKGQQMCSKSWPDSSNTSGNQNNLGKYCFRVPYMASLIEDALCLGDKEIVFGPGDLSWTLGASLVEAEKPWPSSTETTILSLKSKEV LYSSVLLFLLLLFISFIVYYKQIKLPMTGKKIPAVRLSLPSYVHPKLRPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.015G079900 [exp]	0	1
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.008G060100 [exp]	2.23	0.8479	Pt-EMB101.2
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015300 [exp]	3.16	0.7581
AT1G55210			Disease resistance-responsive ...		Potri.003G216200 [exp]	4.24	0.8098
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G009000 [exp]	4.47	0.7845
AT1G43130		LCV2	like COV 2 (.1)		Potri.005G148000 [exp]	12.24	0.8026
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.010G033500 [exp]	12.64	0.7512	POR1.2
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.013G017400 [exp]	13.49	0.7350	Pt-RALFL23.3
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.012G079200 [exp]	13.49	0.7388
AT5G11190	AP2_ERF	SHN2, SHN3	shine2, Integrase-type DNA-bin...		Potri.018G028000 [exp]	14.73	0.7548
AT1G51630			O-fucosyltransferase family pr...		Potri.008G008300 [exp]	15.09	0.7258

Compare expression of checked genes

Potri.015G079900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.