Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1) AT1G78450 113 / 6e-31 SOUL heme-binding family protein (.1) AT1G78460 97 / 7e-25 SOUL heme-binding family protein (.1) AT2G37970 53 / 3e-08 SOUL-1 SOUL heme-binding family protein (.1) AT3G10130 48 / 2e-06 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088400 [exp] 379 / 1e-135 AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1) Potri.010G044200 [exp] 186 / 3e-59 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1) Potri.001G379000 [exp] 146 / 1e-43 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1) Potri.001G067100 [exp] 115 / 1e-31 AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1) Potri.016G109400 [exp] 64 / 1e-12 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.016G098500 [exp] 62 / 3e-11 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001247 [exp] 288 / 2e-99 AT1G17100 142 / 3e-42 SOUL heme-binding family protein (.1) Lus10042093 [exp] 279 / 8e-96 AT1G17100 143 / 2e-42 SOUL heme-binding family protein (.1) Lus10013045 [exp] 157 / 6e-48 AT1G17100 124 / 5e-35 SOUL heme-binding family protein (.1) Lus10012559 [exp] 146 / 1e-42 AT1G17100 292 / 1e-99 SOUL heme-binding family protein (.1) Lus10041532 [exp] 142 / 4e-42 AT1G17100 293 / 3e-101 SOUL heme-binding family protein (.1) Lus10029117 [exp] 119 / 3e-33 AT1G17100 99 / 3e-25 SOUL heme-binding family protein (.1) Lus10017193 [exp] 68 / 6e-14 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10027752 [exp] 57 / 5e-10 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10022712 [exp] 56 / 4e-09 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10000227 [exp] 49 / 5e-07 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [poplar] [flax] SHS2 PF04832 [poplar] [flax] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Potri.015G080000.2 pacid=42775534 polypeptide=Potri.015G080000.2.p locus=Potri.015G080000 ID=Potri.015G080000.2.v4.1 annot-version=v4.1 ATGGAGAAACCAAGGTGGTGGTTGTTTCTGTTACCTGGTATTGTAGTGTTGGATTTGGTTTGTCTTTGCAAGGCAATCGAATCGCCACAGTATGCAGTGG TGCACGCGGAATCAGATTTTGAGGTCAGATTATATGTGAATTCCACATGGATGTCTGCTCCAGTTAATGAACTCTCCTTTGAGAAAGCCACTTTGTTTGG CTTTCACAGGTTGTTTCAATACATCCAAGGTGCCAATCTAAATTCTTCGAGGATTGCAATGACAGCTCCTGTTGTGACTAGCATAGTCCCAGGAGCTGGG CCCTTTCGATCATCAGCCTACATCATTCGATTTTACTTGCCTGTGAAATTCCAAGCTGACCCACCAGTCCCCCTTGATGAACTGCACCTGAAACCATACA CATGGAACAGTCGTTGTGTTGCTGTGAGGAAGTTCTCTGGATATGCGAAGGATGAGAATGTTGCAAGAGAAGCAAAAAGACTCGCTGTCAGCTTGAGCAT GTCTCCATGGGTCAACGTAACTTCTACTGAAAACAATTGTTCCTATTCGATTGCTCAGTACGATTCTCCATTCCAGTTTATCCATCGTACCAATGAAGTA TGGGCGGATATAAAAGCACCCGGAGCAAATGGTTGCCAATCCGGTGTAATAGCCTCATACTGA
AA sequence Show only first row Show all	>Potri.015G080000.2 pacid=42775534 polypeptide=Potri.015G080000.2.p locus=Potri.015G080000 ID=Potri.015G080000.2.v4.1 annot-version=v4.1 MEKPRWWLFLLPGIVVLDLVCLCKAIESPQYAVVHAESDFEVRLYVNSTWMSAPVNELSFEKATLFGFHRLFQYIQGANLNSSRIAMTAPVVTSIVPGAG PFRSSAYIIRFYLPVKFQADPPVPLDELHLKPYTWNSRCVAVRKFSGYAKDENVAREAKRLAVSLSMSPWVNVTSTENNCSYSIAQYDSPFQFIHRTNEV WADIKAPGANGCQSGVIASY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17100			SOUL heme-binding family prote...		Potri.015G080000 [exp]	0	1
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.012G134600 [exp]	1.00	0.9013	Pt-CDPK5.3
AT1G51200			A20/AN1-like zinc finger famil...		Potri.003G205500 [exp]	3.16	0.8971
AT3G56680			Single-stranded nucleic acid b...		Potri.016G032500 [exp]	3.16	0.8722
AT5G03970			F-box associated ubiquitinatio...		Potri.019G013900 [exp]	3.74	0.8038
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	4.24	0.8955
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	6.00	0.8902
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.014G109700 [exp]	7.21	0.8048
AT2G39100			RING/U-box superfamily protein...		Potri.008G215200 [exp]	8.00	0.8397
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	9.16	0.8641
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	10.24	0.8558

Compare expression of checked genes

Potri.015G080000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.