Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10790 230 / 9e-71 UBX domain-containing protein (.1) AT4G11740 69 / 2e-12 SAY1 Ubiquitin-like superfamily protein (.1) AT4G23040 66 / 2e-11 Ubiquitin-like superfamily protein (.1) AT4G00752 61 / 1e-09 UBX domain-containing protein (.1) AT2G43210 42 / 0.0008 Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145200 [exp] 218 / 3e-66 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.001G085600 [exp] 211 / 2e-63 AT4G10790 520 / 0.0 UBX domain-containing protein (.1) Potri.003G122300 [exp] 75 / 3e-14 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.001G109500 [exp] 72 / 1e-13 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.014G075600 [exp] 72 / 2e-13 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1) Potri.017G036600 [exp] 43 / 0.0003 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027684 [exp] 341 / 1e-115 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10003214 [exp] 199 / 5e-59 AT4G10790 525 / 0.0 UBX domain-containing protein (.1) Lus10039951 [exp] 192 / 3e-58 AT4G10790 117 / 2e-29 UBX domain-containing protein (.1) Lus10017317 [exp] 134 / 3e-35 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1) Lus10036564 [exp] 78 / 2e-15 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1) Lus10006321 [exp] 73 / 9e-14 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10029591 [exp] 73 / 1e-13 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10041365 [exp] 71 / 3e-13 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Potri.015G080200.1 pacid=42775999 polypeptide=Potri.015G080200.1.p locus=Potri.015G080200 ID=Potri.015G080200.1.v4.1 annot-version=v4.1 ATGTCATGGTCAATGAGGGAAAGTTCAAGAGCAACGAGAGAGGTTTCTTTCAATGGAATTGTTCGACGTATGGTGAACCTCCCTAGGAGTATTGCAGGGG GGTTTTATAGAGTTATGGGTCATGGCATAGGTCGCATAGGAATAGGAGGTAGAAGAGATCAAAATCCAATACCAAACTTCCCATTGCAACCTCCTCAAGA GCCCCTCATTGCACCAGAAGAGTGGACCTTTCTATCCGTTTTTGAGCAGCAATATGGCTCAACACATCCTTTCTTTTATGCTTGCCAATTCATGGAAGCC TTAAAGACAGCAGAAGATGAGCACAAGTTTATGTTCATGTATCTTCACTCTCCGCAGCACCCTTTCACTCCCTCTTTCTGTTGGGAGACTCTATGTTCAG AGTTGGTGGTCCAGTTTCTTGATGCTAACTTTGTTTGTTGGGGAGCACTTGCTGATAGAGGAGAGGGTTTGCAAATGGCTGTAACATTGCAGCCCGCAAG CTTTCCATGTTGTGCAGTAATAGCTCCTGCTGCTGGCAATAGCATAGCAGTGCTGCAACAGATGGAAGGGCCGATTTCCCCGGCAGAGCTGGTTGAGATT CTGCAGAGGACAGTGGAGGAGCAAGGGTTGGCATTTGGCAATTCAAGAGCAAAGGAAGAGGAGACAACAAGAGCAAAGGCCAAAGAGGAAGAGAGAAAAG GCGCGAGGGCCAAAGAGGAAGAGAAGATGAGAGCAGATCGTCAACTAAGAGAAGAACAAGACGCAGCATATCTTGCAGCTCTAAAGATAGATAAGGAAAA GGAAAAACTCAACAGCCTGCTTCCAGAGAGGAAATTTCAGAAACCAGCTGATTCTTCAAATAAAGCAAATTATGAAAAGCTAAGGCAGAATGCAAGTCAG AAACAGTTTGGTAAATCAAAAGAAGCTTCTACTGTTAGAGAAACAGCTAACGGGTCCAAAGATTCTCAAGCAACACAGATTCTGATAAGGTTTCCAAATG GTGAAAGAAAAGAGCAGAGTTTTTCCTGCTCAGATAAGATCCAGTCGGTTTACAGATACATCGATTCATTAGGGCTACCAGGCGTTGGCAACTACAGATT AATCTCAAGCTTTCCTCGAAGAGTCTACAGTGTTGATCAGATGGGAATAACTCTGAAAGATGCTGGCCTCCACCCTAAAGCAACCCTTTTCCTGGAGCTT CTTTGA
AA sequence Show only first row Show all	>Potri.015G080200.1 pacid=42775999 polypeptide=Potri.015G080200.1.p locus=Potri.015G080200 ID=Potri.015G080200.1.v4.1 annot-version=v4.1 MSWSMRESSRATREVSFNGIVRRMVNLPRSIAGGFYRVMGHGIGRIGIGGRRDQNPIPNFPLQPPQEPLIAPEEWTFLSVFEQQYGSTHPFFYACQFMEA LKTAEDEHKFMFMYLHSPQHPFTPSFCWETLCSELVVQFLDANFVCWGALADRGEGLQMAVTLQPASFPCCAVIAPAAGNSIAVLQQMEGPISPAELVEI LQRTVEEQGLAFGNSRAKEEETTRAKAKEEERKGARAKEEEKMRADRQLREEQDAAYLAALKIDKEKEKLNSLLPERKFQKPADSSNKANYEKLRQNASQ KQFGKSKEASTVRETANGSKDSQATQILIRFPNGERKEQSFSCSDKIQSVYRYIDSLGLPGVGNYRLISSFPRRVYSVDQMGITLKDAGLHPKATLFLEL L

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10790			UBX domain-containing protein ...		Potri.015G080200 [exp]	0	1
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G166300 [exp]	1.00	0.9317
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.018G074200 [exp]	2.44	0.9092
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.014G060200 [exp]	2.64	0.8838
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.010G174100 [exp]	3.16	0.9150
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.005G083400 [exp]	4.35	0.8300
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.013G060200 [exp]	4.89	0.8931	Pt-MYR1.2
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.005G245000 [exp]	4.89	0.8990
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	5.91	0.8941
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052900 [exp]	6.32	0.8698
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G047900 [exp]	10.48	0.8275

Compare expression of checked genes

Potri.015G080200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.