Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63080 547 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G06550 96 / 6e-21 unknown protein AT1G78280 89 / 2e-18 transferases, transferring glycosyl groups (.1) AT3G20810 56 / 5e-08 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065400 [exp] 102 / 3e-23 AT5G06550 711 / 0.0 unknown protein Potri.002G099400 [exp] 88 / 5e-18 AT1G78280 1234 / 0.0 transferases, transferring glycosyl groups (.1) Potri.005G215200 [exp] 54 / 1e-07 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001249 [exp] 288 / 6e-95 AT5G63080 232 / 8e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10042091 [exp] 180 / 8e-53 AT5G63080 164 / 2e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016202 [exp] 107 / 1e-24 AT5G06550 724 / 0.0 unknown protein Lus10029343 [exp] 105 / 4e-24 AT5G06550 730 / 0.0 unknown protein Lus10010350 [exp] 91 / 6e-19 AT1G78280 1211 / 0.0 transferases, transferring glycosyl groups (.1) Lus10036482 [exp] 86 / 2e-17 AT1G78280 1194 / 0.0 transferases, transferring glycosyl groups (.1) Lus10031818 [exp] 49 / 6e-06 AT3G20810 497 / 1e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10031247 [exp] 49 / 6e-06 AT3G20810 500 / 8e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF13621 [poplar] [flax] Cupin_8 Cupin-like domain
Representative CDS sequence Show only first row Show all	>Potri.015G080400.2 pacid=42775321 polypeptide=Potri.015G080400.2.p locus=Potri.015G080400 ID=Potri.015G080400.2.v4.1 annot-version=v4.1 ATGGGTATCGAAATTGGAGGGTCAATAGAGAAGGTGAATGGGAAAGAAATAAGTTATAATGAGTTTGTGGAGAGATATTTAGCGAAGAACCAACCAGTTG TTTTAACAGGTTTAATGGATGATTGGAAGGCTTGCAAAGATTGGGTCTTTGATAGTGGAAAACCCAATTTGAAGTTCTTCTCGACTCACTTTGGCAATTC CAAAGTTCAGGTTGCTGATTGTGGGACTAGAGAATTTACGGATCAGAAGAGAGTAGAAATGACTGTTTCTGAGTTTATTGACCATTGGATTGATGCCAAA GAGTGTGGTGGTGCATCAAATTCATTTCAAGAGGGTAATGACAAGTTAGTGCTATATTTAAAGGACTGGCATTTTGTAACGGAGTACCCAGAATATGTAG CATACAGAACTCCTCTGTTTTTTTGCGATGATTGGCTCAATCTGTATCTCGACCATTATCGCATGCATAATGATTCTGATACTTGTCAAGAGAATGATGG AATAAGTTGCTCTGATTATCGGTTTGTTTATATGGGAGCAAAAGGATCCTGGACTCCACTTCATGCTGATGTTTTCAGGTCATATAGTTGGTCAGCGAAT GTGTGTGGGAAGAAGAAATGGCTTTTTCTACCTCCTTCTCAATGTCATCTTGTTTTTGACAGGGGCTTTAAAAGCTGTGTTTATGATATTTTTGATGATG CTAGTGAAACAAACTTTCCAGGTTTTAAGAAAGCTCTCTGGTTGGAGTGCTCTCAAGAACAGAATGAAATTATCTTTGTACCTAGTGGATGGTATCATCA AGTTCATAATATGGAAGATACAATTTCAATAAATCACAACTGGTTCAATGCGTATAATCTTTCATGGGTGTTGGATTTGCTTTCGAGAGACTACAAGGAA GCTAAGGAGTACATAGAAGACATCCGTGATATCTGTGATGATTTTGAAGGTCTATGCCAACGCAATCTTGCTGCTAACACAGGAATGAATTTTTCGGATT TTTTTATCTTCCTATCTCGCTTCTTCTCGGCCAATATCCTCCAACTCTACTGTCAACTTAGAGAAGAAGGAATTTCAGTCTGGAGTTCGTCTAAAATGGC TAAGCATTTAGTTTTTAATTTAGCATCTATACGGAGGATTGCATTGAAATTGACAAGCATGGATGTTGTAGCTGGAAATCATGGCTTCTTCTTGGATCTG ATGGAAACGTTAGATGATCCCAATTTTCTTAAACTGTTCATTGATGTGGGCAGAGCATATGGGAAAATACACGAGCAACAGAATTGTAGTTGTGACACAA AGAAAGCTTGGATGGTTGAGTTTTTAGACTACAGCTCTCATATACGCAATCCTGAAGATTTTGTTAAGTTCATTGACTATTCTGTAGCAAAACTCAGTGC TAGTTTCTGTGAGGAAAATCTTTTGTTGTCTGGATTGAACAACTGGCCGCTCTTTGAAGATCAATGA
AA sequence Show only first row Show all	>Potri.015G080400.2 pacid=42775321 polypeptide=Potri.015G080400.2.p locus=Potri.015G080400 ID=Potri.015G080400.2.v4.1 annot-version=v4.1 MGIEIGGSIEKVNGKEISYNEFVERYLAKNQPVVLTGLMDDWKACKDWVFDSGKPNLKFFSTHFGNSKVQVADCGTREFTDQKRVEMTVSEFIDHWIDAK ECGGASNSFQEGNDKLVLYLKDWHFVTEYPEYVAYRTPLFFCDDWLNLYLDHYRMHNDSDTCQENDGISCSDYRFVYMGAKGSWTPLHADVFRSYSWSAN VCGKKKWLFLPPSQCHLVFDRGFKSCVYDIFDDASETNFPGFKKALWLECSQEQNEIIFVPSGWYHQVHNMEDTISINHNWFNAYNLSWVLDLLSRDYKE AKEYIEDIRDICDDFEGLCQRNLAANTGMNFSDFFIFLSRFFSANILQLYCQLREEGISVWSSSKMAKHLVFNLASIRRIALKLTSMDVVAGNHGFFLDL METLDDPNFLKLFIDVGRAYGKIHEQQNCSCDTKKAWMVEFLDYSSHIRNPEDFVKFIDYSVAKLSASFCEENLLLSGLNNWPLFEDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Potri.015G080400 [exp]	0	1
AT1G56090			Tetratricopeptide repeat (TPR)...		Potri.005G097300 [exp]	2.44	0.7843
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013000 [exp]	5.83	0.7895
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.018G030500 [exp]	9.48	0.7541
					Potri.015G008200 [exp]	12.84	0.7435
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Potri.005G195400 [exp]	13.26	0.7339
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.003G063700 [exp]	14.69	0.7750
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.003G010400 [exp]	16.09	0.7509
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	19.59	0.7420
AT3G59670			unknown protein		Potri.005G144800 [exp]	29.12	0.7483
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.004G100700 [exp]	44.72	0.6727

Compare expression of checked genes

Potri.015G080400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.