Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09840 1455 / 0 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT5G03340 1454 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 1420 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G01610 439 / 5e-142 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 400 / 7e-130 CDC48B cell division cycle 48B (.1) AT1G03000 270 / 2e-77 PEX6 peroxin 6 (.1) AT3G56690 256 / 4e-72 CIP111 Cam interacting protein 111 (.1) AT5G08470 243 / 1e-67 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G05910 236 / 5e-65 cell division cycle protein 48-related / CDC48-related (.1) AT4G29040 213 / 6e-61 RPT2A regulatory particle AAA-ATPase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088200 [exp] 1518 / 0 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 1447 / 0 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 1441 / 0 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 1296 / 0 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 442 / 3e-143 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G128700 [exp] 412 / 7e-134 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 265 / 8e-76 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.001G174100 [exp] 253 / 6e-71 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.006G035000 [exp] 252 / 1e-70 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021442 [exp] 1432 / 0 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 1428 / 0 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 1424 / 0 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 1415 / 0 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 1401 / 0 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 1307 / 0 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 772 / 0 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 432 / 2e-136 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1) Lus10039722 [exp] 425 / 2e-136 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Lus10018033 [exp] 418 / 4e-136 AT2G03670 813 / 0.0 cell division cycle 48B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0332 [poplar] [flax] AcetylDC-like PF02359 [poplar] [flax] CDC48_N Cell division protein 48 (CDC48), N-terminal domain CL0402 [poplar] [flax] Cdc48_2-like PF02933 [poplar] [flax] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.015G080600.1 pacid=42775092 polypeptide=Potri.015G080600.1.p locus=Potri.015G080600 ID=Potri.015G080600.1.v4.1 annot-version=v4.1 ATGGAGGATCCAAGCTCTAGCCAGCCCTCCTCTTCCACTGACCCGAAAAGTGGTAAGAAAGATTTTTCGACTGCGATTTTAGAGCGAAAGAAGTCTCCCA ATCGTCTTGTTGTTGACGAGGCGATCAATGATGATAACTCTGTGGTTGCTATGCATCCTGCTACAATGGAGAAGCTTCAGTTTTTTCGTGGTGACACTGT GCTAATTAAGGGAAAGAAGCGTAGAGACACTGTTTGCATTGTTCTTGCTGAGGAACAATGTGAGGAACCAAAAATCAGAATGAACAAAGTTGTCAGGGCT AATCTTAGAGTCCGTCTTGGTGATGTTGTGTCTGTCCATCAATGTCCTGATGTGAAGTATGGGAAGCGGGTTCATATCCTTCCTATTGATGACACTATTG AGGGTGTTACTGGCAATCTTTTTGATGCATATTTGAAGCCATATTTCTTGGAATCTTACCGCCCTGTTAGGAAAGATGACCTTTTCCTTGTCAGGGGTGG CATGCGCAGTGTCGAGTTCAAAGTAATTGAGACAGACCCTGGTGAATACTGTGTTGTGGCACCAGATACCGAGATCTTTTGTGAAGGAGAGCCCATCAAA CGCGAGGATGAAGAGAGATTGAATGAAGTGGGCTATGATGATGTTGGGGGTGTTAGGAAACAAATGGCTCAGATTCGTGAGCTAGTTGAGCTTCCTCTTA GACACCCACAGCTTTTCAAATCAATTGGTGTGAAACCACCAAAAGGTATATTGCTGTATGGACCACCTGGGTCCGGTAAAACTCTGATTGCAAGAGCTGT TGCTAATGAGACAGGGGCATTCTTCTTTTTGATTAATGGTCCTGAGATAATGTCAAAGCTGGCTGGTGAGAGTGAAAGCAACCTGAGGAAGGCGTTTGAA GAAGCTGAAAAGAATGCACCATCCATAATTTTTATCGATGAGATAGATTCTATTGCTCCTAAGAGGGAAAAGACTCATGGTGAAGTGGAGAGGCGTATAG TTTCACAACTTTTGACTTTAATGGATGGCCTTAAGTCACGGGCACATGTGATTGTTATGGGGGCTACCAATAGGCCCAATAGCATTGATCCAGCTTTGAG GAGATTTGGGAGATTTGATCGAGAGATTGACATTGGTGTGCCAGATGAAGTTGGACGGTTGGAGGTCCTCAGAATTCATACTAAAAATATGAAACTTGCT GAAGAGGTTGATCTTGAAAAAGTTGCAAAGGACACCCATGGTTATGTTGGTGCAGATCTTGCAGCTCTTTGTACTGAGGCAGCTCTTCAGTGTATTAGGG AGAAAATGGATGTTATTGATTTGGAGGATGACACAATTGATGCCGAGGTGTTAAACTCAATGGCTGTGACTAATGAGCACTTCCGAACTGCATTGGGAAC TTCAAATCCATCAGCCTTGCGTGAAACAGTTGTGGAGGTTCCTAATGTCTCATGGGAGGATATTGGTGGATTGGAGAATGTTAAAAGAGAGCTTCAAGAG ACTGTCCAATATCCAGTGGAGCATCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCTAAAGGTGTTCTCTTTTATGGACCTCCTGGCTGTGGTAAAA CCCTACTTGCAAAGGCAATTGCTAATGAATGCCAGGCCAACTTCATTAGTGTCAAGGGTCCTGAGCTTCTAACCATGTGGTTTGGAGAAAGTGAAGCAAA TGTGCGGGAGATATTCGACAAAGCACGGCAGTCAGCCCCATGTGTACTTTTCTTTGACGAACTTGATTCCATTGCTACTCAGCGTGGCAGCTCTGTAGGA GATGCTGGGGGTGCTGCTGATAGAGTCTTGAATCAACTTCTGACGGAAATGGATGGCATGACAGCAAAGAAAACAGTTTTTATCATTGGAGCAACAAACA GGCCAGATATTATCGACCCAGCATTGCTTAGGCCCGGGCGTCTGGACCAGTTGATTTATATTCCTCTTCCGGACGAGGCTTCCCGTCTTCAGATATTTAA AGCATGTTTGCGGAAGTCACCTGTTTCTAAGGATGTTGACCTGACAGCTCTTGCACGATATACTAATGGTTTTAGTGGTGCTGATATCACTGAAATTTGT CAACGTGCCTGCAAATATGCCATTAGAGAAAATATTGAGAAGGATATTGAGAAGGAGAAAAGGAAGCAAGAGAATCCCGAAGCAATGGAAGAGGATGATG TTGATGAGGTCCCAGAAATAAAGGCAGCACATTTTGAGGAGTCAATGAAATATGCACGACGAAGTGTCAGTGATGCAGACATCAGGAAGTACCAATCTTT TGCTCAGACCTTGCAGCAATCTCGCGGATTTGGTACTGAGTTCCGGTTTCCAGACCGTCCTGAGAATGCTGCAGATGGAGGAGCTGCAGATCCTTTTGCT TCAGCAACTACCGCTGCCGATGAGGATGATCTATACAGCTGA
AA sequence Show only first row Show all	>Potri.015G080600.1 pacid=42775092 polypeptide=Potri.015G080600.1.p locus=Potri.015G080600 ID=Potri.015G080600.1.v4.1 annot-version=v4.1 MEDPSSSQPSSSTDPKSGKKDFSTAILERKKSPNRLVVDEAINDDNSVVAMHPATMEKLQFFRGDTVLIKGKKRRDTVCIVLAEEQCEEPKIRMNKVVRA NLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKDDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIK REDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLA EEVDLEKVAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDTIDAEVLNSMAVTNEHFRTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQE TVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG DAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPVSKDVDLTALARYTNGFSGADITEIC QRACKYAIRENIEKDIEKEKRKQENPEAMEEDDVDEVPEIKAAHFEESMKYARRSVSDADIRKYQSFAQTLQQSRGFGTEFRFPDRPENAADGGAADPFA SATTAADEDDLYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.015G080600 [exp]	0	1
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Potri.011G156900 [exp]	6.24	0.6645
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Potri.001G402500 [exp]	6.40	0.7093
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.001G230500 [exp]	14.89	0.6924	ATCS.2
AT4G31980			unknown protein		Potri.003G206901 [exp]	28.39	0.5730
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.016G011000 [exp]	51.08	0.5597
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.019G051500 [exp]	53.88	0.5527
AT1G43690			ubiquitin interaction motif-co...		Potri.005G191300 [exp]	57.16	0.6004
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.003G045700 [exp]	245.94	0.5002	Pt-ATRLI1.2

Compare expression of checked genes

Potri.015G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.