Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48210 255 / 5e-84 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124408 [exp] 592 / 0 AT3G48210 236 / 1e-76 unknown protein Potri.012G088000 [exp] 489 / 5e-176 AT3G48210 222 / 6e-71 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018093 [exp] 301 / 4e-102 AT3G48210 238 / 3e-77 unknown protein Lus10042089 [exp] 296 / 3e-100 AT3G48210 219 / 4e-70 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08234 [poplar] [flax] Spindle_Spc25 Chromosome segregation protein Spc25
Representative CDS sequence Show only first row Show all	>Potri.015G080900.6 pacid=42776613 polypeptide=Potri.015G080900.6.p locus=Potri.015G080900 ID=Potri.015G080900.6.v4.1 annot-version=v4.1 ATGGAATGGAAAGCGACGGAAACTGTACGAGCAAAAATGGAGTCCTTGCGGTTGATTTGCGACAGAGATGCCCAAATCCAACTGCAGAAAATGGACTCCT TCACGGCGTCGTTTTCCAACTCTATGGATTCAGTCAAGGCCAGAGCAGAAGAAACTGTGCAGAATCAAGGGAAATTAGGGAGGTTGAAATCTAGCTTGAA AGAAGCTGATGGTGAATTTGTTAAAGTTCTGGCAGTTAAGACTCAGAAAGAGGCCAAGCAGCTGGTAACAAGGGACTCCATATCTGCTACAAGAGCTAGA ATACAAAAACTTCAAAAGAGTGTTCAAGTTCAAAGGGCCAGGAGGGATGAGCATGCAGCAATCATGTCCCAGCAATCTCTAGCTTTGGCAACATCCAAAG AAACAGAACACCAAGACATCGACCATAGAAGGGAAATTCAAGAGGCAATGTTATGGTACAATATGGTTCTTGGCTTCAAAATTGAAGGTGGCAGGGGGGT AAAATTCACATTCAACAACATCAATTTGAAAAATCCATACAAGGAGTACTCTTTCACCATTCGCTATGAAAATGATATGTACACATTGTTGGCTTGTGAT CCACAATTGAATGACACCAAACAGTTGATCCATGAGTTGAATAAAACCAATGGCTTGTTCAAATTTGTCAGAAAATTAAGAGAGAAGTTTCAAGAAGCTG CACCACTTGGATTCTTGCCTCAGTCCACAACTCTTCATCAAGAGACAACAATATCTGTGTCTGCTCCAGTTTTTAGTGACGTAAGTGAATCTCCATCAAC GACAAGCCAAACTTCAGATGAACTCAAAAGAAATTCCAAGAGAAGTAGGCATGGAAGAGGAGGGAGACAGGCAATCATGTCTCCTGTATCTGTTCGCCGG TCCCCACGCTTTAAGGGTAAGAAATGA
AA sequence Show only first row Show all	>Potri.015G080900.6 pacid=42776613 polypeptide=Potri.015G080900.6.p locus=Potri.015G080900 ID=Potri.015G080900.6.v4.1 annot-version=v4.1 MEWKATETVRAKMESLRLICDRDAQIQLQKMDSFTASFSNSMDSVKARAEETVQNQGKLGRLKSSLKEADGEFVKVLAVKTQKEAKQLVTRDSISATRAR IQKLQKSVQVQRARRDEHAAIMSQQSLALATSKETEHQDIDHRREIQEAMLWYNMVLGFKIEGGRGVKFTFNNINLKNPYKEYSFTIRYENDMYTLLACD PQLNDTKQLIHELNKTNGLFKFVRKLREKFQEAAPLGFLPQSTTLHQETTISVSAPVFSDVSESPSTTSQTSDELKRNSKRSRHGRGGRQAIMSPVSVRR SPRFKGKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48210			unknown protein		Potri.015G080900 [exp]	0	1
AT4G28230			unknown protein		Potri.019G116200 [exp]	2.44	0.9157
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	3.60	0.9166
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	9.00	0.9043
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.001G147500 [exp]	10.48	0.8793
					Potri.016G136300 [exp]	10.95	0.8753
AT5G65360			Histone superfamily protein (....		Potri.002G028800 [exp]	11.22	0.8804
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	13.85	0.8957
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	14.66	0.8947
AT1G48405			Kinase interacting (KIP1-like)...		Potri.012G038000 [exp]	15.58	0.8684
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.006G226600 [exp]	19.18	0.8809

Compare expression of checked genes

Potri.015G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.