Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64310 605 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22150 314 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 314 / 4e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 310 / 1e-96 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 306 / 8e-96 MEF22 mitochondrial editing factor 22 (.1) AT2G03380 303 / 9e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 305 / 4e-94 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 303 / 8e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 305 / 9e-94 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 304 / 2e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156800 [exp] 343 / 1e-108 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 317 / 1e-99 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G135600 [exp] 313 / 2e-99 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G152000 [exp] 315 / 1e-98 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.013G145000 [exp] 309 / 6e-98 AT1G03540 721 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G191000 [exp] 311 / 1e-96 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G076100 [exp] 305 / 2e-96 AT4G33170 383 / 1e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 312 / 3e-96 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 309 / 1e-95 AT3G22690 582 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028074 [exp] 759 / 0 AT1G64310 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025624 [exp] 753 / 0 AT1G64310 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 317 / 5e-101 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 314 / 4e-98 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018492 [exp] 309 / 7e-98 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 313 / 9e-98 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031028 [exp] 310 / 2e-97 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012873 [exp] 311 / 4e-96 AT2G40720 946 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039703 [exp] 304 / 9e-96 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 307 / 7e-95 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.015G082366.1 pacid=42775792 polypeptide=Potri.015G082366.1.p locus=Potri.015G082366 ID=Potri.015G082366.1.v4.1 annot-version=v4.1 ATGTTGATTAAATTTCAGTCACTTTTCTTACAACTTTCAAAAACCCATCAAACACTATCAAGAACCAAACAATTACATGCTTTAGTAACCAAAACCCACC TCGTACAAGACCCATTTTATGCAACAAAACTTGTAAGATTCTATGCTTTAAACAATGACCTCTCCTCTGCTCGTAACCTGTTTGATAAAACTCCTCAACG CAGTGTTTTCTTATGGAATTCCATCATCAGAGCTTATGCTCAAGCTCATAAATTTGATGATGCATTCTTGCTGTACACAAAGATGATTGGATTTGATGTA ATACCAGATAAGTATACGTATGCGTGTCTTATACGTGCATGTTGTGAGGATTTTTATGTGGATGGGTTGAGAATTGTTCACGGAGGAGTGATTGTTTCCG GTCTGGGATTGGATTCGGTTACTTGCAGTGCATTAGTTACAGGTTACTCAAAAATGGGTCTTGTTGGTGAAGCAAGCAAGGTGTTTTGTGGGGTTTTTGA ACCAGATTTGGTTCTGTGGAATGCTATGATTTCTGGCTGTGGTTATTGTGGATTTGGTGATAAAGGGTTGCTTTTTTTTAATGAAATGAGAGACAACGGG AATAAAAGGCCAGATGGTTATACCTTTGTTGCGTTAATCTCGGGTTTAGCAAATTCTAGCTCGCTTGAGCTTGGCCAAGGAATTCATGGGTTATGCTTGA AAAGTGGTTTTGATTTTAATGATCATGTAGGCAGTTCACTTGTCAGCATGTATTCGAGATTTAGTTGCATCAATCTGGCATATAGTGTATTTAGAAGTTT ATGCCAGCCCGATTTAGTAACATGGTCTGCTTTGATAACTGGATTTTCTCAGGCTGGAGACCATGAGAAGGCATTGCTTTTCTACAAGAATCTGAATTTG GCGGGTAAAAAGCCAGATTCTGTTTTGATTGCTAGTGTATTGGTGGCAACAGCTCAATTGGCAAATGTAGGGCCTGGTGCTCAGATACATGGTTACATAG TTCGATATGGATTTGAATCACATGTCATGGTTTCTTCTGCTCTAATAGATATGTATTCAAAGTGCGGTTTTGTGGGATTGGGGCTTCGTGTCTTTGAGAA TATGCCAAACAGGAATATTGTTTCATACAATTCTATAATATCAGGTCTTGGCTTGCATGGACTTGCTTCCCAAGCTTTTGACATGTTTACGGAGATAGTA GAGAAAGGATTGAAACCTGATGAGTCTACTTTCTCTGCTCTCCTTTGTGCTTGCTGCCATGCTGGCCTTGTTAAAGATGGAAGGGAAATTTTCAGAAGGA TGAAAGATGAGTTTTGGATCCAAGCTAGAACAGAGCATTATGTTCACATTGTAAAGCTTCTTGGGATGGCAGGAGAGCTGGACGAGGCATATAATTTTAT CCTGTCCTTGAAGCAACCAGTAGATTCTGGCATTTGGGGAGCATTGCTGTCATGCTGCGATGCTCATGGGGATTCTGAGTTGGCAGAAATTGTGGCCCAG CAGCTTTTTGACGGCGAGCCCAAAAAGGGTGCCTACAGAGTCATGCTTTCTAACGTATATGCTGGCGATGGGAGATGGGTTGATGTTGAGAAGATGAGAG ATTATATAACTACTGCTGGAGCAGAGAAGATGCCTGGTCTTAGTAGGATTGGAAGTTATTGA
AA sequence Show only first row Show all	>Potri.015G082366.1 pacid=42775792 polypeptide=Potri.015G082366.1.p locus=Potri.015G082366 ID=Potri.015G082366.1.v4.1 annot-version=v4.1 MLIKFQSLFLQLSKTHQTLSRTKQLHALVTKTHLVQDPFYATKLVRFYALNNDLSSARNLFDKTPQRSVFLWNSIIRAYAQAHKFDDAFLLYTKMIGFDV IPDKYTYACLIRACCEDFYVDGLRIVHGGVIVSGLGLDSVTCSALVTGYSKMGLVGEASKVFCGVFEPDLVLWNAMISGCGYCGFGDKGLLFFNEMRDNG NKRPDGYTFVALISGLANSSSLELGQGIHGLCLKSGFDFNDHVGSSLVSMYSRFSCINLAYSVFRSLCQPDLVTWSALITGFSQAGDHEKALLFYKNLNL AGKKPDSVLIASVLVATAQLANVGPGAQIHGYIVRYGFESHVMVSSALIDMYSKCGFVGLGLRVFENMPNRNIVSYNSIISGLGLHGLASQAFDMFTEIV EKGLKPDESTFSALLCACCHAGLVKDGREIFRRMKDEFWIQARTEHYVHIVKLLGMAGELDEAYNFILSLKQPVDSGIWGALLSCCDAHGDSELAEIVAQ QLFDGEPKKGAYRVMLSNVYAGDGRWVDVEKMRDYITTAGAEKMPGLSRIGSY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082366 [exp]	0	1
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	2.82	0.8132
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.015G047600 [exp]	10.09	0.7825
AT2G17140			Pentatricopeptide repeat (PPR)...		Potri.004G205600 [exp]	14.69	0.7807
AT1G28690			Tetratricopeptide repeat (TPR)...		Potri.004G054000 [exp]	20.19	0.7946
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	23.40	0.8053
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	29.74	0.7833
AT1G02060			Tetratricopeptide repeat (TPR)...		Potri.014G056400 [exp]	31.63	0.7757
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	32.72	0.7702
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	45.71	0.7693
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	46.90	0.7800

Compare expression of checked genes

Potri.015G082366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.