Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26600 609 / 0 ARO4 armadillo repeat only 4 (.1) AT5G66200 378 / 5e-123 ARO2 armadillo repeat only 2 (.1) AT4G34940 301 / 1e-93 ARO1 armadillo repeat only 1 (.1) AT4G36030 190 / 4e-52 ARO3 armadillo repeat only 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045500 [exp] 676 / 0 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.004G172500 [exp] 400 / 2e-131 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.005G113000 [exp] 393 / 6e-129 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.009G131900 [exp] 207 / 2e-58 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004620 [exp] 577 / 0 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1) Lus10026695 [exp] 570 / 0 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1) Lus10027837 [exp] 206 / 1e-59 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10025059 [exp] 211 / 2e-59 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10041905 [exp] 205 / 1e-57 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10028452 [exp] 204 / 3e-57 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10027838 [exp] 192 / 8e-57 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10036897 [exp] 142 / 4e-36 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10037087 [exp] 118 / 4e-30 AT5G66200 221 / 1e-68 armadillo repeat only 2 (.1) Lus10037086 [exp] 114 / 7e-28 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.015G082800.7 pacid=42775196 polypeptide=Potri.015G082800.7.p locus=Potri.015G082800 ID=Potri.015G082800.7.v4.1 annot-version=v4.1 ATGTCATCTGCTTCAACCGCTACTGTTACTTCTTCTTCTACAGTACCTCCTCGTGTAGTAGAAGAGAAAACTGTGCAAGAAGAACTCTCTCTTCCAATCT TACTTGCAGATCGTGTCATAAAATCAGCCCAAGAAGCTGAATCTTTAAGGCAAGACTGTTCTGACTTAGCGAAACAAGTTGACCGCCTTTCCCAAATGCT CCGCTCTGCCGTCCGCCTTGCTGTCTCCATCCCTTCCCTCTATGACCGTCCTCTCCGCCGTATCGCCTCCGACATCACCAGGAATCTTGACCGTGCGCTA ACACTTGTCCGCAAATGCAAGAAACATAGTGGGGTACTTCGGCAAGTGTTTTCTATTACCACAACTGCTGATTTTCGTAAGGTTTCGAATCTTTTAGAGT CTTCTATTGGTGATATGAAATGGCTGCTTTCGGTTTTTGAGTCTGATGGTGGTGCTCATTTGTCTTTGCCTCCTATTGCTAGTAACGATCCTATCCTTGC TTGGGTTTGGTCTTCTATTTCTGCTGTTCAAATGGGTCAAGTTAAGGATCGTGTTGATGCCGCCAATCAACTCGCTTCGTTAGCGCGTGATAATGATAGG AATAAGAAGATGATTGTTGAAGAAGGTGGGATTTTGCCTTTGTTGAAGTTGCTCAAGGAGGGTGCTTCTGCGGAGGCACAAATTGCTGCTGCCACTGCAC TTTCTAATATTGCAAGTGATAGAGAAAGAGTTAGGTTGATTGTTGATGCACTTGGGATTTCGATGATTGTTGGGGTTTTAGGGGATTCACAGACGAAGGT TCAGATTTCGGTGGCCAATTTGGTGGCGAGAATGGCGGCTTTGGATGATTATGCACAGGATGAGTTTATGAGATTGAATGTGACTAGACCATTGGTGTCT TTGTTGTCTAGTCATTTGGATTTGGAAATAGCGAGTAATAATCCTGTTAAAACTAGTATTCCCTCGCTTATCGAAATGAACAAAAAATTAGCTTATAAGA ATATTAAGGCTAATTATAATTCGGACAGTAGTAGTCATGGTGGTTCACATAGTAATAAGGAGAGGGAAATGGAGACACCAGAGATGCAGCTTAAGCTTAA GGTTAGTTGTGCAGAGGCACTGTGGAAACTGTCAAGAGGGAGTGTGTCCAATAGTAGGAAGATTACGGAGACAAAAGGCTTGCTTTGCTTAGCGAAGATT GTCGAGAGGGAAAAAGGGGAGCTGCAGTTTAATTGTTTGATGACCATTATGGAGATCACGGCAGTGGCAGAGTCCAATGCTGATCTTAGACGTGCAGCTT TCAAGACTAATTTGCCTGCTGCAAAGGCAGTTTTGGATCAGCTTTTAAGAGTAATTCAAGAAGAAAGTGATCCACAGTTGCAGATTCCTGCTATTAGGTC AATTGGTTGCTTGGCTCGAACATTTCCTGCGAGGGAGACTCGAATAATGGGGCCTTTGGTTTCTCATCTTGGTAATAGGAATGTGGAAGTCGCTACAGAA GCTGCTATTGCCTTGGGGAAATTCGCATCTCCGGAAAATTTCAATTGTTCCGAGCATTCAAAAGCAATTATAGAGTTTGATGGGGTTCCCCCTTTAATGA AATTACTACGGTCTGGTGATCAGTCTCAACTGCAGGGACTTGTATTATTATGTTACCTCGCATTGAATGCTGGGAACAGTAAGGCTCTTGAGCAAGCACG CGCTTTGAATGCTCTTGAGGGGACAGCTCGTTCTGTTTTAGCCCAACATCCTGAATTGAAGGATTTGTTTGCCAAGGCCATACACCACCTCACTCTTTAT CAGGCTGGAGCTCCTCTCAATAGACAATCTTTGGCACCATAA
AA sequence Show only first row Show all	>Potri.015G082800.7 pacid=42775196 polypeptide=Potri.015G082800.7.p locus=Potri.015G082800 ID=Potri.015G082800.7.v4.1 annot-version=v4.1 MSSASTATVTSSSTVPPRVVEEKTVQEELSLPILLADRVIKSAQEAESLRQDCSDLAKQVDRLSQMLRSAVRLAVSIPSLYDRPLRRIASDITRNLDRAL TLVRKCKKHSGVLRQVFSITTTADFRKVSNLLESSIGDMKWLLSVFESDGGAHLSLPPIASNDPILAWVWSSISAVQMGQVKDRVDAANQLASLARDNDR NKKMIVEEGGILPLLKLLKEGASAEAQIAAATALSNIASDRERVRLIVDALGISMIVGVLGDSQTKVQISVANLVARMAALDDYAQDEFMRLNVTRPLVS LLSSHLDLEIASNNPVKTSIPSLIEMNKKLAYKNIKANYNSDSSSHGGSHSNKEREMETPEMQLKLKVSCAEALWKLSRGSVSNSRKITETKGLLCLAKI VEREKGELQFNCLMTIMEITAVAESNADLRRAAFKTNLPAAKAVLDQLLRVIQEESDPQLQIPAIRSIGCLARTFPARETRIMGPLVSHLGNRNVEVATE AAIALGKFASPENFNCSEHSKAIIEFDGVPPLMKLLRSGDQSQLQGLVLLCYLALNAGNSKALEQARALNALEGTARSVLAQHPELKDLFAKAIHHLTLY QAGAPLNRQSLAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Potri.015G082800 [exp]	0	1
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Potri.010G065400 [exp]	4.58	0.8057
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.010G048200 [exp]	5.74	0.7622	EIF4.3
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.008G074033 [exp]	8.12	0.7838
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.008G074000 [exp]	11.61	0.7718
AT1G31460			unknown protein		Potri.001G128600 [exp]	12.72	0.7151
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.014G116900 [exp]	14.96	0.7241
					Potri.003G068350 [exp]	18.70	0.7369
AT5G67630			P-loop containing nucleoside t...		Potri.006G118900 [exp]	22.24	0.7776
AT1G50660			unknown protein		Potri.011G090100 [exp]	22.29	0.7641
AT3G10760	GARP		Homeodomain-like superfamily p...		Potri.006G034900 [exp]	27.20	0.7772

Compare expression of checked genes

Potri.015G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.