Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63120 706 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 665 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 442 / 2e-148 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 439 / 9e-147 DEAD box RNA helicase family protein (.1.2) AT3G06480 426 / 7e-137 DEAD box RNA helicase family protein (.1) AT1G20920 387 / 2e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 370 / 9e-119 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 343 / 3e-111 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 345 / 5e-107 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 321 / 2e-101 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G084600 [exp] 809 / 0 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 672 / 0 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 451 / 1e-149 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 446 / 1e-147 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 435 / 1e-139 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.002G003600 [exp] 397 / 5e-125 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 391 / 5e-123 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 380 / 6e-122 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G098800 [exp] 349 / 5e-113 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019484 [exp] 749 / 0 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 742 / 0 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037646 [exp] 665 / 0 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 665 / 0 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10032133 [exp] 436 / 2e-145 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 432 / 6e-144 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 432 / 1e-138 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 421 / 8e-138 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 410 / 4e-130 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10037527 [exp] 372 / 3e-119 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G083000.1 pacid=42776675 polypeptide=Potri.015G083000.1.p locus=Potri.015G083000 ID=Potri.015G083000.1.v4.1 annot-version=v4.1 ATGAACCCTTACGACAACCGCTACTCCGACCCTGACTCTTACCGTCACCGTCACCATCGCAGTGACTTAATGGGCCAAAAAACTCCAGTGGTACCCACAA TGATAGGGCCTGTTCCTCATGGCGGTGGTGCTGGGGTTCCTCCGCCTCCGTCTTTTGCGGGTAGAGGCGGTCCCCCTCCAGTTGGTGGAGGTTATCCTGC TTTTGAGCGACCTTCTAGTGGATTCAGTGTTGGACGAGGGGGTGGAGGAGGAGGAAGGGGGTTTAGTGGTGGCCGAGGGTCTAATTTTCATGGTGGGGAT AGAAGAAATGATGCTGGCCGTGGGAGAGGCTGGAATTCTGGTTCTGGCCGTGGTGGTGGTGGTGGAAGAGGGGGGAGGTTTGGAGGGGGAGATCCAAGGA GAGAGTTGGATAATATTGCACTTCCAAAGCAGGATTTTGGGGACTTGGTGCCTTTTGAGAAGAACTTATACTTCGAGAATCCTTCTATTAGGGCTATGTC GGAACATGAAGTGGTTACGTTTCGTGCTAGAAGAGAAATTACTGTTGAAGGTCATGACGTGCCTAGGCCTATTCGAATTTTTCACGAGGCCAATTTCCCT GATTACTGCTTACAGGTGATTGCTAAGTTGGGTTTTGTTGAGCCAACGCCAATTCAAGCTCAAGGGTGGCCAATGGCTCTAAAGGGTAGAGATCTAATTG GCATTGCTGAGACTGGTTCTGGTAAGACACTGGCATATCTGCTACCAGCTTTTGTGCATGTTGCTGCTCAGCCTCGATTGGTACATGGTGATGGTCCGAT TGTGTTAGTATTAGCTCCTACAAGAGAGCTGGCAGTTCAGATTCAAGAAGAAGCTTTGAAGTTTGGTTCAAAGGCGAATATTAGGAGCACATGCATATAT GGCGGTGCTCCCAAGGGACCCCAAATTCGTGATCTTCAAAGAGGTGTTGAAATTGTTATTGCTACCCCTGGTCGACTAATAGATATGTTGGGAGCTCAAC ACGTGAATTTGCGAAGAGTCACATACCTAGTGTTGGACGAGGCTGATCGCATGTTGGACATGGGCTTTGAGCCTCAAATTAGGAAAATTGTATCTCAGAT TCGACCAGATAGGCAGACATTGTATTGGAGTGCAACATGGCCCAGGGAGGTTGAAGCTTTAGCAAGGCATTTTTTGCATAATCCATACAAGGTTATCATA GGATCGCAAGATTTAAAAGCAAACCAGTCTATAAAGCAAGTTGTTGAAGTCATGATGGACCTGGAGAAGTACAAACGGCTGATCAAACTGCTGAAAGAAG TGATGGATGGAAGTCGAATTCTAATATTCATGGAGACAAAAAAAGGCTGTGACCAAGTTACAAGGCAGTTGAGAATGGATGGATGGGCAGCTTTGTCCAT CCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCCTGGCGGAGTTCAAAAGTGGCAGAAGCCCTATAATGACTGCCACTGATGTTGCTGCACGGGGC CTTGATGTGAAGGACATAAAATGTGTGGTCAACTATGATTTTCCTTCCAGCCTTGAGGATTATGTTCACAGGATAGGCCGAACTGGTCGAGCAGGAGCTA GGGGAACTGCCCTAACCTTTTTCACAGAGTCAAATGCAAAATTTGCTAGGGATCTTATTAAAATTCTGCAAGAAGCAGGGCAGATTGTGCCCCCGTCATT GTCTGCTATGACTCGGTCAGCTGGTTCTTTTGGAGGTAACTTCCGTTCCAGAGGAAGAGGCGGCTTCGGCAACCGGGGGATGATTTCAGGATCCAATACC GTGCCACTTGGTGCTGGTAGACCTTGGTAA
AA sequence Show only first row Show all	>Potri.015G083000.1 pacid=42776675 polypeptide=Potri.015G083000.1.p locus=Potri.015G083000 ID=Potri.015G083000.1.v4.1 annot-version=v4.1 MNPYDNRYSDPDSYRHRHHRSDLMGQKTPVVPTMIGPVPHGGGAGVPPPPSFAGRGGPPPVGGGYPAFERPSSGFSVGRGGGGGGRGFSGGRGSNFHGGD RRNDAGRGRGWNSGSGRGGGGGRGGRFGGGDPRRELDNIALPKQDFGDLVPFEKNLYFENPSIRAMSEHEVVTFRARREITVEGHDVPRPIRIFHEANFP DYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAFVHVAAQPRLVHGDGPIVLVLAPTRELAVQIQEEALKFGSKANIRSTCIY GGAPKGPQIRDLQRGVEIVIATPGRLIDMLGAQHVNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVEALARHFLHNPYKVII GSQDLKANQSIKQVVEVMMDLEKYKRLIKLLKEVMDGSRILIFMETKKGCDQVTRQLRMDGWAALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARG LDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGARGTALTFFTESNAKFARDLIKILQEAGQIVPPSLSAMTRSAGSFGGNFRSRGRGGFGNRGMISGSNT VPLGAGRPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63120			P-loop containing nucleoside t...		Potri.015G083000 [exp]	0	1
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	2.82	0.8974
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G083000 [exp]	3.00	0.8787
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	3.16	0.8819
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.002G135100 [exp]	8.83	0.8187
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	11.48	0.8506
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	11.74	0.8694
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	13.74	0.8565
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	14.66	0.8701
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.015G084000 [exp]	15.49	0.8456
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	17.02	0.8562

Compare expression of checked genes

Potri.015G083000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.