Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47740 112 / 6e-30 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT2G45910 57 / 4e-09 U-box domain-containing protein kinase family protein (.1) AT3G61410 51 / 1e-07 unknown protein AT5G61550 51 / 3e-07 U-box domain-containing protein kinase family protein (.1.2) AT3G61390 49 / 7e-07 RING/U-box superfamily protein (.1.2) AT4G25160 49 / 1e-06 U-box domain-containing protein kinase family protein (.1) AT4G31230 47 / 4e-06 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G65500 47 / 5e-06 U-box domain-containing protein kinase family protein (.1) AT5G57035 47 / 7e-06 U-box domain-containing protein kinase family protein (.1) AT2G24370 46 / 1e-05 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G084700 [exp] 341 / 7e-120 AT5G47740 124 / 1e-34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.006G003900 [exp] 113 / 4e-30 AT5G47740 215 / 3e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.014G084900 [exp] 67 / 2e-12 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160200 [exp] 65 / 6e-12 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 62 / 8e-11 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 59 / 5e-10 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 58 / 1e-09 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 57 / 2e-09 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019487 [exp] 184 / 5e-58 AT5G47740 128 / 3e-36 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10043338 [exp] 183 / 1e-57 AT5G47740 128 / 2e-36 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10029567 [exp] 117 / 1e-30 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10002238 [exp] 114 / 5e-30 AT5G47740 183 / 2e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10014772 [exp] 67 / 1e-12 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036362 [exp] 66 / 6e-12 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10040825 [exp] 61 / 1e-10 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10016557 [exp] 58 / 2e-09 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10036359 [exp] 48 / 4e-06 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Potri.015G083100.1 pacid=42775659 polypeptide=Potri.015G083100.1.p locus=Potri.015G083100 ID=Potri.015G083100.1.v4.1 annot-version=v4.1 ATGGAAGAAGAGAAATATGTGCCGGCAAGTTCTATGCGGTACAGTGCACGAATCATGTCGCCAGAAATCGTAGAGATAGGGGATGATAGCAAGACTATTA CTAACAGCATAGATGGAATCAATGATGATGTTTATGTAGCTGTTGGTAAAAATGACACTGATGTACTGAAGTGGGCTCTAGATCATGCTGTTTCACCTGG AGCTCGAGTTTTTCTTGTCCATGTTTTTCCTCCTCTGTCATATATCCCTACACCAGTTGGAAGGTTATCAAGGAGCCAATTAAGTCAAGATCAAGTGAGA TTTTACATTAATGAAGAGAATAACAGAAGGAGGAACCAGCTGCAAAAATACATTCGCCTGTGTGCCAATGCCAAGGTGACAGTAGATACAATGCTGCTGG AGAGCAATCTGACTGCCAAAACTATTCTAGAACTCATTCCTGTTCTCAACATCACCCACCTTGTCATGGGAAACAAACGCCTACCTCGCTCAAGGCTGCT AAGGAAAAAGTTGGGAAAAGGAGAATTTGTGAAGAAGAAAGCTCCAGACTATTGTGAGGTTAGTATTATTCATAATGGAAAGAAGATCATGGATGGTAAG GATGGGATAGAGCCAGTGTCATCCTGTGCCCGAAGACCAGATGTTATCCGCAGCTCTGCTAACAAGTTTTTCAACCTTCCATGTTTCCCAGTTTGTAGGA ACATGGTGATGGATTCTTAA
AA sequence Show only first row Show all	>Potri.015G083100.1 pacid=42775659 polypeptide=Potri.015G083100.1.p locus=Potri.015G083100 ID=Potri.015G083100.1.v4.1 annot-version=v4.1 MEEEKYVPASSMRYSARIMSPEIVEIGDDSKTITNSIDGINDDVYVAVGKNDTDVLKWALDHAVSPGARVFLVHVFPPLSYIPTPVGRLSRSQLSQDQVR FYINEENNRRRNQLQKYIRLCANAKVTVDTMLLESNLTAKTILELIPVLNITHLVMGNKRLPRSRLLRKKLGKGEFVKKKAPDYCEVSIIHNGKKIMDGK DGIEPVSSCARRPDVIRSSANKFFNLPCFPVCRNMVMDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47740			Adenine nucleotide alpha hydro...		Potri.015G083100 [exp]	0	1
AT2G29970			Double Clp-N motif-containing ...		Potri.001G252500 [exp]	2.44	0.8399
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Potri.001G439600 [exp]	7.34	0.8592
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.005G084800 [exp]	9.79	0.8561	GCN2.2
AT1G10790			unknown protein		Potri.001G210600 [exp]	22.09	0.8042
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.008G064400 [exp]	29.29	0.8343	COI1.2
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.007G029200 [exp]	33.15	0.8393
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	33.31	0.8186	SHMT9
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.017G068748 [exp]	34.17	0.7365
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	36.74	0.8408
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.012G070900 [exp]	42.96	0.8305

Compare expression of checked genes

Potri.015G083100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.