Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50170 1108 / 0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT1G03370 955 / 0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT3G59660 99 / 4e-21 C2 domain-containing protein / GRAM domain-containing protein (.1) AT1G02120 55 / 3e-07 VAD1 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) AT3G18370 51 / 3e-06 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT5G04220 49 / 7e-06 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G47710 46 / 3e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G61300 48 / 4e-05 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G70790 45 / 9e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G17980 46 / 0.0001 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003200 [exp] 991 / 0 AT1G03370 1372 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.016G003900 [exp] 987 / 0 AT1G03370 1378 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.013G127000 [exp] 117 / 6e-27 AT3G59660 867 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Potri.014G047600 [exp] 60 / 8e-09 AT1G02120 533 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.015G046700 [exp] 58 / 3e-08 AT3G18370 968 / 0.0 C2 domain-containing protein (.1) Potri.012G056000 [exp] 58 / 3e-08 AT3G18370 971 / 0.0 C2 domain-containing protein (.1) Potri.002G137800 [exp] 51 / 3e-06 AT1G02120 459 / 6e-158 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.006G004600 [exp] 47 / 8e-06 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.016G005300 [exp] 47 / 1e-05 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015665 [exp] 1282 / 0 AT5G50170 1099 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10037679 [exp] 1265 / 0 AT5G50170 1097 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10001915 [exp] 997 / 0 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10003910 [exp] 442 / 6e-139 AT1G03370 694 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10025600 [exp] 100 / 1e-21 AT3G59660 761 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10027067 [exp] 88 / 1e-17 AT3G59660 714 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10028209 [exp] 60 / 9e-09 AT1G02120 536 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10042913 [exp] 60 / 1e-08 AT1G02120 483 / 2e-164 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10009672 [exp] 56 / 2e-07 AT3G18370 840 / 0.0 C2 domain-containing protein (.1) Lus10009032 [exp] 55 / 3e-07 AT3G18370 907 / 0.0 C2 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0266 [poplar] [flax] PH PF02893 [poplar] [flax] GRAM GRAM domain CL0209 [poplar] [flax] Bet_v_1_like PF16016 [poplar] [flax] VASt VAD1 Analog of StAR-related lipid transfer domain
Representative CDS sequence Show only first row Show all	>Potri.015G083500.2 pacid=42775367 polypeptide=Potri.015G083500.2.p locus=Potri.015G083500 ID=Potri.015G083500.2.v4.1 annot-version=v4.1 ATGAGGTTATATGTTTATGTCTTGCAAGGCAAAGGCTTGGCTGTGAAGGACACTTACTTTATACTTCAAGTTGGTAAACACAAGTCCAAGACTAGAGTAT TCAGAAACAACTCAAATCCTGTAATGAATGAGGAGTTTGTTTTCAGAGTTAATGGTAATAATGATCAGCAAGAGTTGGTTGTCTCTGTCTTTAATCATGA TGATGATGATGATGATGATTTTGGCAGCTTCTTTAATGGCTCTGGGGATTTAGTGGGTCGGGTTCAGATTCCTGTTTGGTCTGTTGCAGCAGAGCAGAAT CAGACCTTGCCACCTACTTGGTTCTCGCTTGAAAAGCCCATGACTGACAAGTTTATCAATATGGATTGTGGGAAAATTCTTCTCAGTCTCTCCCTGAGCA GAAAATGCGACAAATCTTCTACTAACCACTTTGTTTATGCAAACTCAAATGTTAACGAGGACTATAAAGAATCTGAAGGTCCATGCATATCATCTCATGG CATGCATGGCTGTAAAGCTCCTCGTGTCAAGATAGCAGAAGGGAAGAAGTTAATGAAGACCATCGTGAGTCGTTTGGAGAGGGTTTTCAATAAGCATGAG GAAAATTCAAGAACTGATGATTCTTCAGAGTTAACTAGTGCTTCTTCTGATTGTGAGGATTGTGATCATTCATCAAGTTGTAGTTTCGTAGAAGGATTGG AGATCATGAGTTCAAGAGATAATGAACAAGAAATGCCTGAAAACCTCCAGGGTGGTATTCTTCTTGATAAAATATATGTTGTCCCCTCGTGGGATCTCAA TATGTTTCTTTTTGCACCCAATTCACTGTTTATGAAGGACCTAGAAGAGCTGCAGGGAACAACAGATGCTGAAGAGGGGCCTTGGAAAAGGAAATCAGCA AACATGTCTCATTTAACGCGAACTGTTTCCTATACAAAAGCTGCAACAAAGTTAGTTAAGTCCGTTAAAGCTACCGAGGAGCAAACATATATAAAAGCAG ATGGAAAGGAATTTGCAGTATTGACAAATGTTAGCACTCCAGAAGTTCCATATGGAAATACATTCAACATTGAGTTGCTATACAAGATACTGCCTGGTCC AGAAATATCTTCAGGAGAAGCATCTTCCCACCTTTTAATATCATGGGGAATTAATTTCTGTAAAAGCACAATGATGAAAGGTATGATTGAAGGAGGAGCG AGGCAGGGACTGAAGGAGAGTTTTGATCAGTTTGCCAACTTGTTGGCTCAGAATTTCAAGACCATGGATTCTATGGATTCATCAAACAAGGACCATATGC TGGCAAAGTTGGAAGCAGCACACCAGTCAGAATGGCAATTGGCATCAGATTTCTTTTGGAATTTCACAGCTGTGTCCACCATTTTTATGATTTTATACGT AGTTGTTCATATTTTTTTCTGTGAGCCAAGCATAGTCCAAGGTTTGGAATTTAATGGTCTTGATTTACCAGACAGTTTTGGACAGCTCATCACTTGTGCA ATTTTAGTCATTCAATTGGAACGAGTTTGTAACATGATGAAACACTTCATACAAGCTAGGCTTCAAAGAGGCAGTGACCACGGTGTCAGAGCCCAAGGTG AAGGGTGGGTTCTTACTGTGGCATTAATTGAAGGCACCAATTTACCATCCTTGGATTCGACAGGGTTGTCAGATCCTTATGTAGTGTTGACCTGTAATGG TAAAACAAGAACAAGTTCTATACAGCTTCATACGAGTGATCCCCAATGGAATGAAATACTAGAGTTTGATGCAATGGATGAACCACCCTCAGTTCTAGAT GTGGAAGTTTTTGATTTTGACGGTCCATTTGACCAGGCCACCTCACTTGGGCATGCTGAGATAATGTTTTTGAAGCACACATCAACTGAACTAGCAGACA TGTGGATTCCCCTTGAGGGAAAGCTCTCGCAGTCTTCTCAGTCAAAGCTACACTTGCGAATATTTATAGATAACGACAAAGGTGTTGAAACTGTAAAGGA GTACTTAACAAAGATGGAGAAGGAAGTCGGGAAGAAGTTGAACTTACCATCACCTCACAGGAATTCGACTTTCCAGAAATTGTTTGAGTTGCCACCAGAA GAATTTCTCATCAATGATTTTACATGCCAACTGAAGAGGAAAATGCCTTTGCAGGGAAGGCTTTTTCTGTCTGCAAGAATTCTTGGTTTTTATTCCAATT TGTTTGGACATAAAACAAAATTCTTCTTTCTCTGGGAGGATATCGAAGACATCCAAGTGCATCCTCCATCACTATCATCCGTGGGTAGTCCTTTTCTGGT CATAATTCTGCGAAGGGGAAGAGGTCTTCATGCAAGACGTTGGGCGAAATCACAAGATGAAGAAGGCAGGCTAAGATACCACTTCCAATCATTTATTTCA TTCAACATTGCAAGCAGGACAATCATGGCCTTGTGGAAAACAAAAACAATGATCCCTGAGCATAAAACACAACTTGCTGAAGAACAGCCTCAAGATGAAG AAAAACGGTCCATCATGCTTGAAGACTATGGATGCTCTGTGAGTCCTGAAGAAGTAAAGATGCCCAAGATTTTCTCTGCTGAACTTCCTTTTAGTGTAGA ATCACTGATGGAAATGTTTGACGGAGGAAAGATGGAGCACGAAATCATGGAAAAATCTGGACGTCTTAGCTATGCAACTACAGCATGGGAGTCAGTAAAG CCTGGAGTTTTTGAACGGCAAATCACGTACAGATTCAAACACCATATTTCAATCTTTGGAGGGGAAGTCACCTGCACACAACATAAATCTCCGCTTGAAA ATGATAAAGGGTGGACTGTTAATGAGCTCACGGTGATGCATGATGTCCCATTTGCTGACTACTTCCATGTCAATCTTCGGTACCAGATTGAGAAATCCTC CCTTGCTCATTGTGCATGCAAGTGTGGTGTTTATGTTGGGATCACCTGGTTGAAAAGCACCAAGTTCCAACAAAGAATCACTCGAAACATAACTGATAAA TTCACACAAATAATGAAGGAGGTATTTGAATTGATCAAGAGGGAGAAACTTTTTGCAAATCATGATCAACATCCCCTTCGACACGAAGATGCTACAATGC GTATTTGA
AA sequence Show only first row Show all	>Potri.015G083500.2 pacid=42775367 polypeptide=Potri.015G083500.2.p locus=Potri.015G083500 ID=Potri.015G083500.2.v4.1 annot-version=v4.1 MRLYVYVLQGKGLAVKDTYFILQVGKHKSKTRVFRNNSNPVMNEEFVFRVNGNNDQQELVVSVFNHDDDDDDDFGSFFNGSGDLVGRVQIPVWSVAAEQN QTLPPTWFSLEKPMTDKFINMDCGKILLSLSLSRKCDKSSTNHFVYANSNVNEDYKESEGPCISSHGMHGCKAPRVKIAEGKKLMKTIVSRLERVFNKHE ENSRTDDSSELTSASSDCEDCDHSSSCSFVEGLEIMSSRDNEQEMPENLQGGILLDKIYVVPSWDLNMFLFAPNSLFMKDLEELQGTTDAEEGPWKRKSA NMSHLTRTVSYTKAATKLVKSVKATEEQTYIKADGKEFAVLTNVSTPEVPYGNTFNIELLYKILPGPEISSGEASSHLLISWGINFCKSTMMKGMIEGGA RQGLKESFDQFANLLAQNFKTMDSMDSSNKDHMLAKLEAAHQSEWQLASDFFWNFTAVSTIFMILYVVVHIFFCEPSIVQGLEFNGLDLPDSFGQLITCA ILVIQLERVCNMMKHFIQARLQRGSDHGVRAQGEGWVLTVALIEGTNLPSLDSTGLSDPYVVLTCNGKTRTSSIQLHTSDPQWNEILEFDAMDEPPSVLD VEVFDFDGPFDQATSLGHAEIMFLKHTSTELADMWIPLEGKLSQSSQSKLHLRIFIDNDKGVETVKEYLTKMEKEVGKKLNLPSPHRNSTFQKLFELPPE EFLINDFTCQLKRKMPLQGRLFLSARILGFYSNLFGHKTKFFFLWEDIEDIQVHPPSLSSVGSPFLVIILRRGRGLHARRWAKSQDEEGRLRYHFQSFIS FNIASRTIMALWKTKTMIPEHKTQLAEEQPQDEEKRSIMLEDYGCSVSPEEVKMPKIFSAELPFSVESLMEMFDGGKMEHEIMEKSGRLSYATTAWESVK PGVFERQITYRFKHHISIFGGEVTCTQHKSPLENDKGWTVNELTVMHDVPFADYFHVNLRYQIEKSSLAHCACKCGVYVGITWLKSTKFQQRITRNITDK FTQIMKEVFELIKREKLFANHDQHPLRHEDATMRI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50170			C2 calcium/lipid-binding and G...		Potri.015G083500 [exp]	0	1
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.008G156600 [exp]	1.41	0.7722
AT3G24600			Late embryogenesis abundant pr...		Potri.006G160100 [exp]	6.48	0.7158
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.014G074700 [exp]	7.34	0.7582
					Potri.017G044300 [exp]	9.32	0.7499
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	14.28	0.7479
AT1G63245		CLE14	CLAVATA3/ESR-RELATED 14 (.1)		Potri.002G228000 [exp]	16.61	0.7190
AT1G28260			Telomerase activating protein ...		Potri.011G053800 [exp]	19.23	0.6933
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029800 [exp]	21.79	0.7253	DHQD2
					Potri.003G133350 [exp]	27.49	0.6788
AT2G01690			ARM repeat superfamily protein...		Potri.010G106700 [exp]	27.83	0.6611

Compare expression of checked genes

Potri.015G083500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.