Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23280 296 / 3e-100 MAK16 protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G085300 [exp] 484 / 1e-174 AT1G23280 298 / 7e-101 MAK16 protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019649 [exp] 288 / 4e-97 AT1G23280 296 / 2e-100 MAK16 protein-related (.1) Lus10019648 [exp] 280 / 9e-95 AT1G23280 285 / 4e-97 MAK16 protein-related (.1) Lus10000846 [exp] 263 / 4e-88 AT1G23280 273 / 4e-92 MAK16 protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01778 [poplar] [flax] Ribosomal_L28e Ribosomal L28e protein family PF04874 [poplar] [flax] Mak16 Mak16 protein C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.015G083700.2 pacid=42776601 polypeptide=Potri.015G083700.2.p locus=Potri.015G083700 ID=Potri.015G083700.2.v4.1 annot-version=v4.1 ATGCAGCACGATGAGGTCATATGGCAAGTTATCAGGCACAATCACTGCAGTTTTATGGCCAAAATCACAACGGGGAATTTTTGTAGAAACCCATATAACA TAACTGGGGTTTGTAATCGGAGCTCTTGCCCTCTTGCTAATAGTCGCTATGCAACTATCCGTGATCACGATGGTGTCTTTTATTTATATATGAAGACTAT TGAGAGAGCTCATAAACCCAATGAGTTATGGGAAAGAGTAAAGTTGCCGAGAAACTATGAGAAGGCACTTGAAATCATAGACAAGCATTTGATGTACTGG CCAAAGTTTCTTGTGCACAAAGCTAAACAGCGCCTGACAAAAATGACTCAGATGCGTATACGTATGAGGAAGCTGGCATTGAAAACAAGGGAGAAGATAA TGACTACTCCCAGAAAAGAGATAAAGAGAGAATCTAGAAGGGAGAAAAAGGCTGAAACAGCTGCTGAACTGGATAAGAGTATTGAGAAAGAGTTGCTAGA AAGACTCAATGGAGGACTTTATGGTGACATACATAATATTCTACCAAACTATTTCAACAAAATTCTTGACGAAAATGAACTGCATGCTGTTAGCGATGAT GATGATGTAGTGGAACCTGAAATAGAATATGTTCAAGGCTATGATGATCTTGAAGAAGAAGATGATATAGAAGATTTCGGTGGTTTTGCTATTGACGAGT CTCTCAAGAATAATGATGATGCACCTGAGGAGGAAGAGGATATGGACACAGTTGATCGTAAGAGGTTAAAGATTGGATCAGAGTCTGCTCATCGAAAGGT GGAGGAAGATGAACCTAGAAAATCAAAAAAGAAAGCTAGGGTTCTGGTTGAGGTTGAGAATGAAGATGCTTCTGAAAGGCAGAGGGAAACCTTTTGA
AA sequence Show only first row Show all	>Potri.015G083700.2 pacid=42776601 polypeptide=Potri.015G083700.2.p locus=Potri.015G083700 ID=Potri.015G083700.2.v4.1 annot-version=v4.1 MQHDEVIWQVIRHNHCSFMAKITTGNFCRNPYNITGVCNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHKPNELWERVKLPRNYEKALEIIDKHLMYW PKFLVHKAKQRLTKMTQMRIRMRKLALKTREKIMTTPRKEIKRESRREKKAETAAELDKSIEKELLERLNGGLYGDIHNILPNYFNKILDENELHAVSDD DDVVEPEIEYVQGYDDLEEEDDIEDFGGFAIDESLKNNDDAPEEEEDMDTVDRKRLKIGSESAHRKVEEDEPRKSKKKARVLVEVENEDASERQRETF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23280			MAK16 protein-related (.1)		Potri.015G083700 [exp]	0	1
AT2G40430			unknown protein		Potri.008G075700 [exp]	1.73	0.7643
AT3G10530			Transducin/WD40 repeat-like su...		Potri.010G232500 [exp]	2.44	0.8118
AT4G34910			P-loop containing nucleoside t...		Potri.007G021800 [exp]	5.83	0.7986
AT2G40700			P-loop containing nucleoside t...		Potri.019G059100 [exp]	12.00	0.7195
AT1G30240			unknown protein		Potri.010G238000 [exp]	13.41	0.7371
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Potri.015G144600 [exp]	14.00	0.7452
AT3G07870			F-box and associated interacti...		Potri.011G137200 [exp]	14.69	0.7300
AT4G32720		ATLA1	La protein 1 (.1.2)		Potri.018G037900 [exp]	16.73	0.6673
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Potri.010G012800 [exp]	21.90	0.6950	PRL1.1
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	22.18	0.7355

Compare expression of checked genes

Potri.015G083700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.