Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11330 471 / 7e-163 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT5G05850 465 / 2e-160 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT1G12970 341 / 2e-112 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT3G26500 327 / 7e-107 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT4G26050 177 / 3e-50 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT2G19330 176 / 6e-50 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT4G29880 166 / 3e-46 PIRL7 plant intracellular ras group-related LRR 7 (.1) AT4G35470 165 / 9e-45 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 152 / 6e-40 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G15410 94 / 4e-20 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G085600 [exp] 726 / 0 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.010G046500 [exp] 382 / 1e-128 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.018G139700 [exp] 183 / 6e-53 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.006G072700 [exp] 182 / 2e-52 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.001G144100 [exp] 164 / 1e-44 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 164 / 3e-44 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 161 / 2e-43 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.007G065000 [exp] 157 / 2e-41 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.004G088500 [exp] 84 / 7e-17 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017948 [exp] 540 / 0 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10013689 [exp] 492 / 5e-172 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10003229 [exp] 176 / 5e-50 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10035976 [exp] 177 / 8e-49 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 177 / 2e-47 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000900 [exp] 159 / 1e-42 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10004559 [exp] 137 / 4e-37 AT4G35470 274 / 1e-89 plant intracellular ras group-related LRR 4 (.1) Lus10035622 [exp] 100 / 1e-24 AT2G19330 158 / 8e-48 plant intracellular ras group-related LRR 6 (.1) Lus10000681 [exp] 79 / 5e-16 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1) Lus10006817 [exp] 82 / 6e-16 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G083800.1 pacid=42774886 polypeptide=Potri.015G083800.1.p locus=Potri.015G083800 ID=Potri.015G083800.1.v4.1 annot-version=v4.1 ATGGACCCAGACCCGAAAACCCACCCGATTCTCTCTTACGTCATGGCCCGACTTCCCTCTCTCGGACACAAATCCCCTGGCCCCTCCTTCGACATCGAGC AACCACCACAGCCATCACAACCACCACCACAATCTCTATTTCCTCAATTATCCGACCCGGCCCTCCTATCTTCAATGAGACGGGCTGTTGGCGATGTTGC CCAAACCCGATCGGTGCTCCATACTCTAGGCCCCCGGCCCGACCATGAAACCGTGGACACAGCGAAACTCAAACTCAGTGAAATCGAGTCCAATTTATCG AAGCAATTGGAGGATCTTGTGCTTTCTCCGCGGCCATGTGAGATTGATAGGTTAGAGTGGAGGGCGCATTTGGCTGAGAAAGAGAAGAAGATTCGAGAAG AGGCGGAGAAAGAGATAGGGTTTTATAAAATGGTATTGCAATTGGATGAAATGCACAAGGATTATGAGAAGTTGTTGAAGGAAGCGGAGGATAAGTTGGT GAAAATTTATAGGATGGCGGAGCGAGGAGTGGAGGAAGATAAGGAGGTGGAAGGAGTGGAGGTGGAGGAGGAGGTGGAGGTGGAGGTGACTGAGGAGGTT GTGGGAGTGTTGAGAGAGGGGAGCTCGAAAGGGATCGAAAGAGTGGATTTGTCGAATCGGAGACTGAGGTTCTTACCTGAGGGATTTGGGAGGGTTGTGG GGTTGAAAGTGCTTAATCTTTCCAATAATCAACTTCAGGTCATTCCTGATTCAATAACTGGGTTAGAAATTCTTGAGGAGCTCAATCTTGCTTCAAATCT CTTAGAAGCACTGCCAGATTCAATTGGATTACTGCAAAACTTGAAAATCCTGGATGTCTCTAGCAACAAGATAGAGGTATTGCCTGGCACCATTTGTCAT TGCAGGTCGTTGCTGGAATTGGATGTGAGCTTCAACTGCCTGACATACTTGCCGACTAATATTGGACATGAAATGTCGAATCTTCAGAGGCTTTCGATCC AGCTGAACAAGATTTTTTCTCTTCCCACATCTATTGGTGAGATGAGATCTCTGCGCCACCTGGATGCTCATTTCAATGAGCTTCGTGGCCTTCCCCTTGC TATTGGGAAATTGACAAATCTTGAGATCCTCAATTTGAGTGGTAATTTCAGTGACCTGAAAGAACTCCCTGAAACTTTTGGTGATTTGACAAACCTCAAG GAACTTGATCTCAGCAACAACCAGATTTCTGCCTTGCCTGATTCATTTGGTCGGCTGGATAATTTGACCAAGCTCAACCTGGACCAAAATCCCCTTGTAA TTCCGCCGCCAGAAGTTATCAAGGAAGGGGTCGAGGCTGTGAAGATTTTTATGGCTAAGAGGTGGATTGACATACTGGTGGAGGAAGAAAGGAAGAGCAC GCTTGAAGTACAAGAACAAGCACAGACTGGATGGTTGACGCTCAGCACCTCATGGTTGAAAACTTATGCTACTGGTGTTTCTGCTACTGTTTCAGGATTC TTAAGTCCGAGAGTTCCTAGAGATCCTTATCTTGATCAACAGCTATGA
AA sequence Show only first row Show all	>Potri.015G083800.1 pacid=42774886 polypeptide=Potri.015G083800.1.p locus=Potri.015G083800 ID=Potri.015G083800.1.v4.1 annot-version=v4.1 MDPDPKTHPILSYVMARLPSLGHKSPGPSFDIEQPPQPSQPPPQSLFPQLSDPALLSSMRRAVGDVAQTRSVLHTLGPRPDHETVDTAKLKLSEIESNLS KQLEDLVLSPRPCEIDRLEWRAHLAEKEKKIREEAEKEIGFYKMVLQLDEMHKDYEKLLKEAEDKLVKIYRMAERGVEEDKEVEGVEVEEEVEVEVTEEV VGVLREGSSKGIERVDLSNRRLRFLPEGFGRVVGLKVLNLSNNQLQVIPDSITGLEILEELNLASNLLEALPDSIGLLQNLKILDVSSNKIEVLPGTICH CRSLLELDVSFNCLTYLPTNIGHEMSNLQRLSIQLNKIFSLPTSIGEMRSLRHLDAHFNELRGLPLAIGKLTNLEILNLSGNFSDLKELPETFGDLTNLK ELDLSNNQISALPDSFGRLDNLTKLNLDQNPLVIPPPEVIKEGVEAVKIFMAKRWIDILVEEERKSTLEVQEQAQTGWLTLSTSWLKTYATGVSATVSGF LSPRVPRDPYLDQQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.015G083800 [exp]	0	1
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.012G097300 [exp]	3.00	0.6892
AT1G11060			WAPL (Wings apart-like protein...		Potri.004G039900 [exp]	6.32	0.6931
AT5G58610			PHD finger transcription facto...		Potri.002G118600 [exp]	10.09	0.6707
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Potri.005G111600 [exp]	19.59	0.6460
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.010G039900 [exp]	20.71	0.6528	ALA3.3
AT5G55060			unknown protein		Potri.011G089300 [exp]	24.00	0.6573
AT2G25430			epsin N-terminal homology (ENT...		Potri.018G026900 [exp]	26.00	0.6264
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Potri.005G142732 [exp]	27.74	0.6578
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.013G046700 [exp]	29.66	0.6580
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Potri.005G110500 [exp]	30.74	0.6064

Compare expression of checked genes

Potri.015G083800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.