Plant FIBer expression Database

Potri.015G083900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50175 39 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G083900.1 pacid=42775101 polypeptide=Potri.015G083900.1.p locus=Potri.015G083900 ID=Potri.015G083900.1.v4.1 annot-version=v4.1
ATGTGCTCACATGCTTTCCAATTTCTTTCCACTCTCCCATCAATTGATCAAGAAAAAATAATTCTCCAAGAAACTGCCCCTTCTTCTTTCTTCTTGCTTC
TCATTAAGGTTTTTTTCTTTTTTATCAGAGACATGTCCAAGCTGTCTAGAACATCTTCTTCTTCCAAAACAACAACGTTGTTGTTGTTCTTGTTCCTGTT
AATGTTGGCTCTCTTGGTTTCCTTCTGTGCTGTGGTGTGCTACCTCTACGCTTGTACTGCAAACCCTAGCAGACTCAACCGGGCTGGTTTCTTTGGGTCG
GCCTTCTTGGTTTCCGGGGTCTTATTATTATCAACATTGCTTGTTGTTGCTGCCCGTGCCACGGTGTTGACGTGGATCACGGTGCTGGTGCTTCTAGCTT
TTTCGGGAAAGCGACGCCGGGTGCTTGTTCAACAAGGGAGGGAAATCACTGCTGATGTTGTTATGTACTTGATTAGAGGGGCTGCTTAG
AA sequence
>Potri.015G083900.1 pacid=42775101 polypeptide=Potri.015G083900.1.p locus=Potri.015G083900 ID=Potri.015G083900.1.v4.1 annot-version=v4.1
MCSHAFQFLSTLPSIDQEKIILQETAPSSFFLLLIKVFFFFIRDMSKLSRTSSSSKTTTLLLFLFLLMLALLVSFCAVVCYLYACTANPSRLNRAGFFGS
AFLVSGVLLLSTLLVVAARATVLTWITVLVLLAFSGKRRRVLVQQGREITADVVMYLIRGAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50175 unknown protein Potri.015G083900
[exp]
0 1
AT5G56540 ATAGP14, AGP14 arabinogalactan protein 14 (.1... Potri.013G057500
[exp]
3.46 0.9210
AT5G51560 Leucine-rich repeat protein ki... Potri.015G130100
[exp]
4.89 0.9157
AT5G58300 Leucine-rich repeat protein ki... Potri.019G062100
[exp]
8.83 0.8967
AT3G58120 bZIP ATBZIP61 Basic-leucine zipper (bZIP) tr... Potri.013G124400
[exp]
12.48 0.9031
AT5G42560 Abscisic acid-responsive (TB2/... Potri.005G237900
[exp]
14.35 0.9198
AT4G33220 PME44, ATPME44 A. THALIANA PECTIN METHYLESTER... Potri.006G134500
[exp]
14.56 0.8568
AT5G03040 IQD2 IQ-domain 2 (.1.2.3) Potri.006G131100
[exp]
14.69 0.8948
AT1G23190 PGM3 phosphoglucomutase 3, Phosphog... Potri.008G132500
[exp]
16.73 0.9043
AT1G23030 PUB11 ARM repeat superfamily protein... Potri.008G128600
[exp]
20.00 0.9121
AT5G58970 ATUCP2 uncoupling protein 2 (.1.2) Potri.001G247800
[exp]
20.78 0.9074 Pt-UCP2.1

Potri.015G083900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.