Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24690 490 / 4e-164 AtNBR1 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) AT3G24800 46 / 9e-05 PRT1 proteolysis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G085700 [exp] 1082 / 0 AT4G24690 497 / 2e-166 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.012G085450 [exp] 577 / 0 AT4G24690 279 / 2e-87 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.002G241900 [exp] 44 / 0.0003 AT3G24800 314 / 2e-103 proteolysis 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017950 [exp] 539 / 0 AT4G24690 536 / 0.0 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Lus10043320 [exp] 356 / 1e-110 AT4G24690 290 / 1e-86 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Lus10019471 [exp] 164 / 1e-43 AT4G24690 173 / 3e-47 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0006 [poplar] [flax] C1 PF00569 [poplar] [flax] ZZ Zinc finger, ZZ type CL0159 [poplar] [flax] E-set PF16158 [poplar] [flax] N_BRCA1_IG Ig-like domain from next to BRCA1 gene
Representative CDS sequence Show only first row Show all	>Potri.015G084000.1 pacid=42775012 polypeptide=Potri.015G084000.1.p locus=Potri.015G084000 ID=Potri.015G084000.1.v4.1 annot-version=v4.1 ATGGATTCTACTATGGTGATCAAGGTTAAATATAGTGATACACTTAGGCGTTTTAATGCTCACGTAAAGGAGAATGAGCAACTCGATCTTGACATGATTG CACTGAGGGAAAAGATCTTTGGTCTTTTTAATTTTCCTCCAGATGCTGATCTCACTCTGACCTATATTGATGAAGATGGGGATGTGGTTACTCTTGCTGA TGATGATGATCTGCGTGATGTGATGAGGCAGAACCTGAAGTTTTTGAGGATTGATGTACAGCTTAATAATGATAAGTCTGGTAAATCTAATGCTAGATCT AGTGGTAGTTCTACCCCTATGAGGTCCCCCAGGGTCCAGAGTCCATTACCATGCCTCAACAATGGTGTTGCTGACGTTTTGAAATCTGTGCCAGAGCCCT TACGTGAAGTACTCTCAAAGATATCTCTCGACCTGACTTCAAAAGCTGTGGCTTCTAATACAGTGCTCACTGAGCTTGTTGACTGCTTTTCAAAAATGGG GCAATACCACCTGAATCCAACCTCCCAGTCTCATGATGGTATAGGCGCCCAAACTGGAGCTACAGCTCCTACAGTTCTAAATGCTTCCAAGGATGGTGGC TTGAAAGAAGACTTGCTGAATTTAAACTCACCTCTCAAAACTAGCCAGGAGGAGAGGTTTGAAAATGGTACTAAGACTGCGATGTCACCACACACAGCTG TCCCTTCTCCTGTTAATCTGAATCCTAACCCTCAAATTTCCAATTCGTTTGTGCATTATAAACCCCTTGCATCCTTCGTCCCTGCTTGTGATGATTGGAA GGAAGCCAAGAAACAGAATACTGGTCTTCCAACTGGGAAGCCTGGCTGGTTTGGTTTCCCCAACATTCCTGTGAATCATGGCTTTCCTTTATACACTGAT TGTCCATTTAGTGGAATGTCAGTGGCAAATGACTCAGCTTCACGCACTCTCAAAAGTCATGTAATTAAGAGAAACAATTCTCTTAATAATCCCATGGTTG GCATGTTTCATAGGGGTGTTCAATGTGATGGTTGTGGTGTTCATCCAATTACCGGGCCTCGATACAAGTCCAAAGTCAGTAAAGAGGATTATGACCTCTG CAGCATCTGCTTCGCTGAAATGGGTAATGAAGCTGATTACATCAAGATGGATAGGCCGATGCCTTATCGTAATCGGTGGTCTTTCAAGGGGTTTAATGAT CCTACACAGAAATCTTGGGCCATTCCACAGCCTCTCTCTAAAGGTTCATATGGAGTAAAAGGAGCTCAACCTAAGCTAGACAGCCGTTTTGTTTTGGATG TCAATGTGTCAGATGGTACCATGATGCCTACATGTACTCCTTTTACCAAGATTTGGCGAATGCGCAACAATGGTAGTGTCGCATGGCCTCAGGGAGTGCG GCTTGTGTGGATTGGGGGAGACAGGTTCTTCAATACTGATTCTGTTGAGATAGAGATTCCAGTCAATGGTGTGCCTATTGATGGTGAACTTGATGTTGCA GCTGATTTTGTATCTCCTGCATTGCCTGGTAGATACATATCATACTGGAGGATGGCATACCCATCCGGTGGAAAATTCGGGCAGCGTGTTTGGGTTCTTA TTGAGGTTGATGCTTCCCTGAAAGATCCATTCTTCAAATATCTGAACTTGAACGAGTCCCCCAATTACATTGGTTCTAAATTCCCTGGTGTTTTAGATAT GAATGTCCAGCCTGCTGTGGATGGCTGTTTTCTGGAGCCTCAGAACAATACCTTGCTTTCAGAACCAGATGTCCCCATGGTTGACGAACAGCCTAAGAGC CAAGAACTAAAATTCCCTATAGATGATGCCTTACTGATTGGCCATGGTGTTTCAGCCTCTGCTCCTCCCCAGGCCATGCCTTCATCTGTTCCTGTTCTTT ATCCAATGATAGACATTTCTGAAACAGTTCCTGCTAGTACCGAACTCCTTCCCGCTGCGGATGCTTCAACTTCCCCTGAAGAGGTCATTGTTGAAAATGC TGTTGAGAAGACCCTCCTAAAGGAACTCAAGGAAATGGGCTTCAAGCAGGTTGATTTGAATAAGGAGATCTTGAGGCGGAATGAGTATGATCTGGAGCAG TCAGTGGATGATCTTTGTGGTGTTTCTGACTGGGACCCCATTCTCGAGGAGTTGCAAGAGATGGGTTTCCGTGACAAGGAAATGAACAAGCTGCTGCTGA AGAAAAACAATGGGAGTATCAAGGGTGTGGTCATGGATATTCTCACCGGAAAGAAGGCATAG
AA sequence Show only first row Show all	>Potri.015G084000.1 pacid=42775012 polypeptide=Potri.015G084000.1.p locus=Potri.015G084000 ID=Potri.015G084000.1.v4.1 annot-version=v4.1 MDSTMVIKVKYSDTLRRFNAHVKENEQLDLDMIALREKIFGLFNFPPDADLTLTYIDEDGDVVTLADDDDLRDVMRQNLKFLRIDVQLNNDKSGKSNARS SGSSTPMRSPRVQSPLPCLNNGVADVLKSVPEPLREVLSKISLDLTSKAVASNTVLTELVDCFSKMGQYHLNPTSQSHDGIGAQTGATAPTVLNASKDGG LKEDLLNLNSPLKTSQEERFENGTKTAMSPHTAVPSPVNLNPNPQISNSFVHYKPLASFVPACDDWKEAKKQNTGLPTGKPGWFGFPNIPVNHGFPLYTD CPFSGMSVANDSASRTLKSHVIKRNNSLNNPMVGMFHRGVQCDGCGVHPITGPRYKSKVSKEDYDLCSICFAEMGNEADYIKMDRPMPYRNRWSFKGFND PTQKSWAIPQPLSKGSYGVKGAQPKLDSRFVLDVNVSDGTMMPTCTPFTKIWRMRNNGSVAWPQGVRLVWIGGDRFFNTDSVEIEIPVNGVPIDGELDVA ADFVSPALPGRYISYWRMAYPSGGKFGQRVWVLIEVDASLKDPFFKYLNLNESPNYIGSKFPGVLDMNVQPAVDGCFLEPQNNTLLSEPDVPMVDEQPKS QELKFPIDDALLIGHGVSASAPPQAMPSSVPVLYPMIDISETVPASTELLPAADASTSPEEVIVENAVEKTLLKELKEMGFKQVDLNKEILRRNEYDLEQ SVDDLCGVSDWDPILEELQEMGFRDKEMNKLLLKKNNGSIKGVVMDILTGKKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.015G084000 [exp]	0	1
AT2G47210	MYB		myb-like transcription factor ...		Potri.014G117400 [exp]	3.74	0.8821
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	4.12	0.8890
AT5G35560			DENN (AEX-3) domain-containing...		Potri.006G143000 [exp]	4.47	0.8675
AT5G17300	MYB	RVE1	REVEILLE 1, Homeodomain-like s...		Potri.004G074300 [exp]	4.69	0.8349
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.012G088200 [exp]	5.65	0.8609
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.012G081600 [exp]	6.00	0.8406
AT3G09850			D111/G-patch domain-containing...		Potri.018G113600 [exp]	6.92	0.8452
AT4G13970			zinc ion binding (.1)		Potri.014G054600 [exp]	8.83	0.8674
AT4G13780			methionine--tRNA ligase, putat...		Potri.001G317500 [exp]	9.00	0.8527
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	9.48	0.8815

Compare expression of checked genes

Potri.015G084000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.