Plant FIBer expression Database

Potri.015G084300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G153800
[exp]
50 / 6e-06 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019466
[exp]
533 / 0 ND /
Lus10043316
[exp]
448 / 2e-150 ND /
Lus10017959
[exp]
127 / 8e-33 ND /
Lus10041949
[exp]
121 / 8e-30 ND /
Lus10008068
[exp]
63 / 6e-10 ND /
PFAM info
Representative CDS sequence
>Potri.015G084300.1 pacid=42776415 polypeptide=Potri.015G084300.1.p locus=Potri.015G084300 ID=Potri.015G084300.1.v4.1 annot-version=v4.1
ATGATGATGATGGATAGGAGATTTAGCAGGGAGTCCTCGAGAGAAAGCAAAGGGTCTATAACCCTGCAAAAGAAAATTGTTGAGAGTCAGAGACCAAACA
AAACCAAAAATGTACCAGACCTCACAGATTTCATGAATGACATGTTCTTTGGGACCGTGGACAATGACAAGAGATCGTATGACTTAACTGGGGGCCATTC
GGAAGACGAAGAAGAAAGTTTCGATGACAGTACAAGGAGCAACAGCAGTAAGTTAACTCAGGAGTGGCTAGAAGAAGCTAGACGTATGGTGGCGTCATCT
CCTTCGAGGTGTGAATCCCCTTCTAGACTAGTTGGATCACCAAGGTTTGCAGCCGTTCCTGCCAGGCTGTCGTCAGCCTCTATACTTGATAGGAGGGACC
CACTCTCCAGGTCTGCTAGAAGGCACAGATCAAAGGAAGCTTTCAGTGGAGAAATACTAACCAAATCAGCAAAACATAGCCGTAATAAATCAGAATCATT
AGTCGAGACTCCTGCAGAGCCATCCCCAGCATCACAATTCCAAGGGTGGTTCTCCAACATCCTCAAACCACCCTCTAATTTCAATGCCCCAGTTCCAGAC
CCCAGCAGCCCCCACCTATCCAACGACCGTTCCTCCCCACTCTTGGATCCACCGGCCCTGAATCTGCCACCTCGGCAGTCATCATACCGAAAGTCCCGGT
TCCAAACTGAGCCCCCGGCGACCACCGCTCAGGGAATTCCAGCCACTTCACGTAGAACTTTCAAGCCAGCTCCAATATTACGACAAGACATTCATTTGCT
TTCTCCACCAAAGAATCTTATTGAGTCAGCTCAAAGGAGATCAATATCATCAAACAAATGTTCCAAACCAGAGACTCAACCGCTGTCCCCACCAAAGAAT
CTCATGGAGTCGTCTCACAGGAGGTCTATATCAAAGTCTACTTGTTCCATTGAGAAAGTTGCACCAAAGCCTCTTGTAAGTGGGTGCAAAAAGGAAGAAG
AGGGAGAAGAAGATTTTAGTCTTAATGGATTCCTTATAGAGGAAAAAACCAAGATTGAGAAGATCTTGAATAGGGAGCTTGATTCTAAGGCCAAAATCAT
CCTTTCTGGTCCTTCAAACAGTACTAGCTCAATGGTAGCAGCTATATGCTACGCGTTGTTGTTGGCAAATAGAATGACGAAGAATAAAGGAAATAGTGAC
AGAGAGGGAACTGTGGTATTCCCTGTGATGAATACAAGGAGAGGGAGAATGTGGAAGCAGAGACAAGCTGCTTGGTTATTCCAACATGTTGGCCTTGATG
CTACCTCATTGCTCTTCGCTGACGAGGTGGATTTGGAGAGTCTAATGATGGAAGGGAAATTAAACATTCTTGTTGTTGGGCAAGATATCCTCAGAACTAA
CGGCGAGGTTGGATCACAGTGCACTATTCTTACCGATAACTACTGTGAAGATGCCTATGATCTACTTCAAACTCCAGTGCTGAAAAAGCTTTTGCTTGCA
GGTATCCTGTTAGACACACAAAATTTGAATGCATCTGCTACCTGTTCTATGACAAGAGATGCAGAGGCAGTTCAGTTGCTTCTAGTTGGCTCAACCCCAA
AATATAGAAATGCCCTTTTTGATCAATTGATGCAAGATCAAAGAGACAGCTCCTTTATTGAAGCACTAAGGCACAACTATGGAAAGCCCCCCAGTGAGAC
TGAACATATAGGTGGTCGTGATAATGGAGCACAAATGGACCATAGAGGAACAGAAAGCAGGCCAACCCCTGTCTCTCGACATGAAGCCATCCCACAGAAT
TCAGATAAAAATTCTAATAATGTAAGGAATGGGAAGCCTAACAATACAACAAAGCAGCTCCTGCAGCAGCACCGACAGAAGCAAGTTCTGATGCCTCTCG
CGGAAAGAACAAGTTCTTCCTGGCAAAGTGGTTTGGTTTTGGTAAATAAAGATCATAAAAACGTTGATTTGTGA
AA sequence
>Potri.015G084300.1 pacid=42776415 polypeptide=Potri.015G084300.1.p locus=Potri.015G084300 ID=Potri.015G084300.1.v4.1 annot-version=v4.1
MMMMDRRFSRESSRESKGSITLQKKIVESQRPNKTKNVPDLTDFMNDMFFGTVDNDKRSYDLTGGHSEDEEESFDDSTRSNSSKLTQEWLEEARRMVASS
PSRCESPSRLVGSPRFAAVPARLSSASILDRRDPLSRSARRHRSKEAFSGEILTKSAKHSRNKSESLVETPAEPSPASQFQGWFSNILKPPSNFNAPVPD
PSSPHLSNDRSSPLLDPPALNLPPRQSSYRKSRFQTEPPATTAQGIPATSRRTFKPAPILRQDIHLLSPPKNLIESAQRRSISSNKCSKPETQPLSPPKN
LMESSHRRSISKSTCSIEKVAPKPLVSGCKKEEEGEEDFSLNGFLIEEKTKIEKILNRELDSKAKIILSGPSNSTSSMVAAICYALLLANRMTKNKGNSD
REGTVVFPVMNTRRGRMWKQRQAAWLFQHVGLDATSLLFADEVDLESLMMEGKLNILVVGQDILRTNGEVGSQCTILTDNYCEDAYDLLQTPVLKKLLLA
GILLDTQNLNASATCSMTRDAEAVQLLLVGSTPKYRNALFDQLMQDQRDSSFIEALRHNYGKPPSETEHIGGRDNGAQMDHRGTESRPTPVSRHEAIPQN
SDKNSNNVRNGKPNNTTKQLLQQHRQKQVLMPLAERTSSSWQSGLVLVNKDHKNVDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G084300
[exp]
0 1
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.004G017800
[exp]
1.00 0.8740
AT3G54140 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE T... Potri.001G248600
[exp]
2.23 0.8425
Potri.004G069101
[exp]
4.47 0.8445
AT4G13440 Calcium-binding EF-hand family... Potri.019G027200
[exp]
9.89 0.8319
AT1G11330 S-locus lectin protein kinase ... Potri.011G038500
[exp]
17.54 0.7314
AT2G41040 S-adenosyl-L-methionine-depend... Potri.018G120000
[exp]
18.97 0.8109
AT4G12070 unknown protein Potri.018G050100
[exp]
20.56 0.7265
Potri.014G065500
[exp]
22.91 0.7632
Potri.012G110500
[exp]
27.38 0.7823
AT4G35100 SIMIP, PIP3A, P... PLASMA MEMBRANE INTRINSIC PROT... Potri.005G109200
[exp]
31.85 0.7420 MDPIP1.5

Potri.015G084300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.