Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48260 621 / 0 WNK3 with no lysine (K) kinase 3 (.1) AT3G22420 498 / 3e-171 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT5G28080 489 / 4e-169 WNK9 Protein kinase superfamily protein (.1.2) AT3G18750 466 / 6e-159 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT3G51630 464 / 2e-158 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT1G49160 461 / 9e-157 WNK7 Protein kinase superfamily protein (.1.2) AT5G58350 452 / 2e-153 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G04910 442 / 1e-147 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT5G41990 436 / 4e-147 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 423 / 2e-142 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086700 [exp] 925 / 0 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.013G036300 [exp] 518 / 8e-177 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 503 / 5e-171 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 482 / 6e-163 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.016G134600 [exp] 472 / 2e-160 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.019G128600 [exp] 464 / 1e-157 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.003G145300 [exp] 461 / 3e-156 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.013G155100 [exp] 458 / 5e-155 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.001G085500 [exp] 457 / 1e-154 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041947 [exp] 723 / 0 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 692 / 0 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10020236 [exp] 510 / 4e-174 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 508 / 3e-173 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 499 / 3e-170 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10010547 [exp] 494 / 2e-168 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10017318 [exp] 465 / 5e-158 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10030229 [exp] 466 / 1e-156 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10003215 [exp] 468 / 3e-156 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10033225 [exp] 461 / 3e-156 AT5G41990 620 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.015G084600.1 pacid=42775250 polypeptide=Potri.015G084600.1.p locus=Potri.015G084600 ID=Potri.015G084600.1.v4.1 annot-version=v4.1 ATGCCACATGAATCCTCGTCCGAGCCAGACCCCGATGATTCTGATGCTGAGTTCGTCGAGATTGACCCCTCTGGTCGTTATGGTCGGTATAAAGAGGTTT TAGGCAGGGGTGCTTTCAAGAAAGTATATAGAGCATTTGATGAATTGGAAGGAATAGAAGTAGCTTGGAATCAAGTTAAAGTGGCAGATCTATTGCGTAA TTCAGTGGATTTGGAGCGTTTATTTTCTGAAGTTCATTTGCTGAAGACTTTGAAGCATAAAAACATTATCAAGTTTTACAATTCGTGGGTCGATACCAAA AATGAGAATATCAACTTCATCACTGAGATTTTCACTTCAGGCACATTGCGGAAGTATCGGCAGAAGCATAAGCATGTTGATCTGAGAGCATTGAAGAAAT GGTCTAAGCAGATTTTAGAGGGACTTTTATATCTTCATAGTCATGATCCACCAGTTATTCACAGAGACTTAAAATGTGACAACATCTTTGTTAATGGAAA CCAAGGTGAGGTGAAAATTGGTGACTTGGGTTTGGCTGCCATTCTTCAGCAAGCTCGGTCAGCTCATAGTGTTATTGGTACACCGGAGTTTATGGCACCA GAGCTTTATGAGGAGGAATACAATGAGCTTGTTGACATTTATGCCTTTGGCATGTGCTTGCTGGAGTTGGTGACTGTTGAATATCCATATGTCGAATGCT CCAATGCTGCTCAAATATATAAGAAAGTGACATCAGGAATTAAACCGGCATCATTAGCAAAGGTGAAAGATCCTGCTGTTAAAGCATTTATAGAAAAATG TATTGCAAAGGTCTCTGACCGATTGCCAGCAAAGGAACTTTTGATGGATCCCTTTCTTCGATCAGATGAGGAAAATGTAAGTGGAGGTTGCTCTTTACGA CCCAAAGCCCATTCTTCAGGTGGTATTTCTGATCAGCTTGATGTTAATGAAAGTGCCAAGGATAAGGATTCTGCTGCTGAATCAAGTAGAGATTTCTCTG TACAAGGTCAGAGGAAAGACATTAATACAATATTTCTGAAACTAAGGATAGCTGATTCCACAGGTCATTTCCGCAATATCCACTTCCCTTTTGATGTTAA AGTAGATACAGCAATTGCAGTTGCTAGTGAAATGGTAGAAGAGTTGGATGTGACTGATCAAGATGTTTCAACAATTGCTGCTATGATTGATTCAGAAATT CGGTCTCATATTCCCGATTGGGATTCCAACAATGTTTCACCAGAAAATTTAGCTGCTGAGGACTCAGAACCTCCTTCGGAAACTAAGGATGACAGTTCAC CTTTGTCAAATGAATCTAGTCTCTCTCCTGGTAGTCTTGTATTAGAAAAATTGTCTTCAGGCCACAAGTATTGGCGTGACTCACCCAAGGATGTTGATGG AGACTCTCCAAGCAAGCTTGGATGTTCTAACTTGTCTTTTCACAGGTCTTGTCCAAGTAGTCCAAATGATGCCCAGTCACCTGGACAGTTGGAGGCTGGG AGCATGTCTGATGGTGATGATGGCAGTGGAAAAAATGGAAGTCATAGATCTGATAATTTGCATTTTGCTAATAGAAACAGTACATCTGTCAAGATAATTG CTGAGAAACTTGAGAATCTTCTGGTAATGCAGCAACAAGAACTAGAGGAAGTAAAGAGGAAGCACAAAGTAGCCATATCAGACCTTCTGAATGAAGTTTC TCCAGAAATCTGCGTTGAAATTTTAAATATATGTAAACTGAAAATACCTGGTTATGAAATGCGGTGA
AA sequence Show only first row Show all	>Potri.015G084600.1 pacid=42775250 polypeptide=Potri.015G084600.1.p locus=Potri.015G084600 ID=Potri.015G084600.1.v4.1 annot-version=v4.1 MPHESSSEPDPDDSDAEFVEIDPSGRYGRYKEVLGRGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSVDLERLFSEVHLLKTLKHKNIIKFYNSWVDTK NENINFITEIFTSGTLRKYRQKHKHVDLRALKKWSKQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAP ELYEEEYNELVDIYAFGMCLLELVTVEYPYVECSNAAQIYKKVTSGIKPASLAKVKDPAVKAFIEKCIAKVSDRLPAKELLMDPFLRSDEENVSGGCSLR PKAHSSGGISDQLDVNESAKDKDSAAESSRDFSVQGQRKDINTIFLKLRIADSTGHFRNIHFPFDVKVDTAIAVASEMVEELDVTDQDVSTIAAMIDSEI RSHIPDWDSNNVSPENLAAEDSEPPSETKDDSSPLSNESSLSPGSLVLEKLSSGHKYWRDSPKDVDGDSPSKLGCSNLSFHRSCPSSPNDAQSPGQLEAG SMSDGDDGSGKNGSHRSDNLHFANRNSTSVKIIAEKLENLLVMQQQELEEVKRKHKVAISDLLNEVSPEICVEILNICKLKIPGYEMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Potri.015G084600 [exp]	0	1
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.001G103100 [exp]	7.87	0.8438
AT5G05310			TLC ATP/ADP transporter (.1.2....		Potri.019G048700 [exp]	15.90	0.7832
AT4G27190			NB-ARC domain-containing disea...		Potri.018G136700 [exp]	17.77	0.8244
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	19.49	0.8195
AT5G43670			Sec23/Sec24 protein transport ...		Potri.008G161300 [exp]	20.12	0.8224
AT4G03560		FOU2, ATCCH1, A...	FATTY ACID OXYGENATION UPREGUL...		Potri.013G131100 [exp]	24.97	0.7701	CCH1.1
AT4G16970			Protein kinase superfamily pro...		Potri.003G082600 [exp]	28.00	0.7926
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Potri.005G209000 [exp]	29.39	0.7715
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.006G147800 [exp]	31.73	0.7875
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.009G138200 [exp]	34.46	0.8120

Compare expression of checked genes

Potri.015G084600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.