Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48250 714 / 0 BIR6 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02490 314 / 4e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15980 304 / 4e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 128 / 1e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 124 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 124 / 2e-29 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT1G62910 124 / 2e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 122 / 2e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 123 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 123 / 5e-29 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G108000 [exp] 339 / 9e-108 AT3G02490 623 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G108100 [exp] 337 / 4e-107 AT3G02490 604 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 128 / 8e-31 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 127 / 1e-30 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 125 / 3e-30 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123600 [exp] 126 / 6e-30 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025700 [exp] 122 / 1e-29 AT5G18390 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 124 / 2e-29 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 123 / 4e-29 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019474 [exp] 760 / 0 AT3G48250 660 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043322 [exp] 737 / 0 AT3G48250 660 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032092 [exp] 312 / 2e-97 AT3G02490 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 132 / 5e-32 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 130 / 1e-31 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 123 / 2e-29 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003575 [exp] 119 / 1e-28 AT5G18390 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025533 [exp] 121 / 2e-28 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 120 / 3e-28 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032787 [exp] 119 / 3e-28 AT5G18390 625 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.015G084800.1 pacid=42775595 polypeptide=Potri.015G084800.1.p locus=Potri.015G084800 ID=Potri.015G084800.1.v4.1 annot-version=v4.1 ATGAATCGAGCGAGAACAATCCTTAAATGTCTTAGACTCTACAGCTCGGTCTGCTCGAATCAGCTTTCCACAACGCGGTCACTCTCCACTCAGGTGACTC ACTTCTCTTTCTCTCCTTTCTCTTTGCGCGCTCTCTCAAATCATTCTCATAATACTACTTACCGGTTCAATACCCATCAAAAGCTATACTTCTCATCAAA ACCAAACTCAATTGTAGAGCTTTTATCGACAAATGAATGGTCTGCAGAGTTGGAAAACGATTTGGAAAGTTTGAATCCCTCCTGGACCCATGAGACAGTC ATCTATGTTTTGAAGAAACTAGATAAAGACCCACAAAAGGCGTGGGATTTCTTTAATTGGGTCAGTGAGAGAAATGGGTTCAGACCCAGTTCCTTGCTTT ATAGTTTAGTTCTTAGAATAGTTGTTAGCAAGGATTCAATGAAGAAGTTTTGGATTACCATAAAGAAAATGAAAGAAGAAGGGTTTTATATTGATGAAGA AACTTATTTAACCATTATGGGGATCTGTAAAAAAGAAAAAATGGCTAATGATGTGGCGGCTTTGAAGCATTTTTATGATAGGATGATTGATGAGAATGCT AAGGATAATGTAGTGAAGGATGTTGTTCGTATTATTTTGGAGAGAGAGTGGAATAAGGAGGTTGAGAAAAAATTGGTGGGAATGAGAATTGTGCTGACGG ATAATTTTGTGATTAGAGTATTGAAGGAGCTTCGGAGTTATCCTGTGAAAGCCTTGAGGTTCTTCCAATGGGTTGATAGGCGTGAAGGGTATCAACACAA TACTGTTACGTATAATGCCCTTGTGAGGGTTCTTGGTAGGGATGACTCGATTGGGGAATTTTGGAGTGTTGTTGATGAGATGAAGAATGCGGGTTATGAG ATGGATATCGACACTTATATAAAGATTTCGAGGCAGTTTCAGAAAATCAAGTTGATGGAGGATGCTGTCAGGCTTTATGAATTTATGATGGATGGCCCAT TTAAGCCCTCAGTTCAAGATTGCTATATTCTTCTACGAAGCGTCGCGGCAAGCGATAATCCAGATTTGGATTTGGTTTCTAGGGTTGTAGATGGATACAA GGCAACAGGAAATTCCCTTTCTAAGTCTGTTTATGATGGGATGCATAGGTCCTTCACGAGTGCAGGGAAGTTTGATGAGGCAGAAAAGATTGTGAAAGCT ATGAGAGATGCAGGGTATGAGCCCGACAACATCACATACAGTCAGTTGGTTTTTGGACTCTGTAAATCAAAGAGATTGGAAGAAGCATGCAAGGTTTTGG ATGAAATGGAAGCAGGAGGATGCATTCCAGATATCAAGACTTGGACCATTTTGATTCAAGGGCATTTTGCTGCTAATCAAGTTGACAAGGGATTATTGTG TCTTGTCAAGATGACAGAGAAAAACACTGATCCTGATGCTGATTTGCTGGATGTGTTAGTAAAAGGTTTCCTCAGTCAAAGGAAGATGGATGGTGCTTAC ACATTTCTTGTGGAGATGGTGAACAAGCTTCGTTTGGTACCTTGGCAAGCTACTTATAAACTTCTAATTGAAAAGCTCTTACAAGTAAGAAAGCTCGAAG AAGCAACAGACCTTCTACGCTTAATGAAGAAGCATAACTACCCGCCTTTTCCTGAGCCTTTTGATCAATATATATCCAAGTTTGGGACTGTGGAGGATGC TGTGAATTTCTTTAAGGTGCTAAGTGTGAAGGAGTATCCATCATCTGTCGCTTACCTTCGAATGTTGGATTCCTTTTTAAGAGAAGGCAGAGATTCTGAA GCCAGAGATCTGTTGTTCAAGTGCCCTCACCATATCCGTAAAGATCATAAAATCAGCAAACTTTTTGGTTCTGCAAAGACGGGTGATAAGACTGCTTGA
AA sequence Show only first row Show all	>Potri.015G084800.1 pacid=42775595 polypeptide=Potri.015G084800.1.p locus=Potri.015G084800 ID=Potri.015G084800.1.v4.1 annot-version=v4.1 MNRARTILKCLRLYSSVCSNQLSTTRSLSTQVTHFSFSPFSLRALSNHSHNTTYRFNTHQKLYFSSKPNSIVELLSTNEWSAELENDLESLNPSWTHETV IYVLKKLDKDPQKAWDFFNWVSERNGFRPSSLLYSLVLRIVVSKDSMKKFWITIKKMKEEGFYIDEETYLTIMGICKKEKMANDVAALKHFYDRMIDENA KDNVVKDVVRIILEREWNKEVEKKLVGMRIVLTDNFVIRVLKELRSYPVKALRFFQWVDRREGYQHNTVTYNALVRVLGRDDSIGEFWSVVDEMKNAGYE MDIDTYIKISRQFQKIKLMEDAVRLYEFMMDGPFKPSVQDCYILLRSVAASDNPDLDLVSRVVDGYKATGNSLSKSVYDGMHRSFTSAGKFDEAEKIVKA MRDAGYEPDNITYSQLVFGLCKSKRLEEACKVLDEMEAGGCIPDIKTWTILIQGHFAANQVDKGLLCLVKMTEKNTDPDADLLDVLVKGFLSQRKMDGAY TFLVEMVNKLRLVPWQATYKLLIEKLLQVRKLEEATDLLRLMKKHNYPPFPEPFDQYISKFGTVEDAVNFFKVLSVKEYPSSVAYLRMLDSFLREGRDSE ARDLLFKCPHHIRKDHKISKLFGSAKTGDKTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Potri.015G084800 [exp]	0	1
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	4.00	0.9080
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	6.92	0.8781
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Potri.008G036600 [exp]	8.71	0.7876
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G120900 [exp]	9.16	0.8676
AT2G20540		MEF21	mitochondrial editing factor ...		Potri.018G035900 [exp]	12.12	0.8408
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.006G039600 [exp]	12.40	0.8498
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	14.28	0.8684
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	14.28	0.8736
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	14.31	0.8678
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	15.96	0.8491

Compare expression of checked genes

Potri.015G084800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.