Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24710 695 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G53230 87 / 6e-18 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 82 / 3e-16 ATPase, AAA-type, CDC48 protein (.1) AT5G19990 81 / 3e-16 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 81 / 3e-16 RPT6A AAA-type ATPase family protein (.1) AT2G27600 81 / 4e-16 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G56690 80 / 1e-15 CIP111 Cam interacting protein 111 (.1) AT5G58290 78 / 2e-15 RPT3 regulatory particle triple-A ATPase 3 (.1) AT3G19740 77 / 7e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G09840 77 / 9e-15 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086400 [exp] 847 / 0 AT4G24710 712 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G091600 [exp] 86 / 1e-17 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.009G144300 [exp] 85 / 1e-17 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.006G125500 [exp] 85 / 2e-17 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.010G237100 [exp] 84 / 3e-17 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.006G035000 [exp] 84 / 9e-17 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.012G088200 [exp] 83 / 1e-16 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.008G022216 [exp] 82 / 1e-16 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 82 / 1e-16 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019473 [exp] 719 / 0 AT4G24710 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043321 [exp] 711 / 0 AT4G24710 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021441 [exp] 82 / 3e-16 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10017762 [exp] 81 / 3e-16 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10023018 [exp] 82 / 4e-16 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 81 / 5e-16 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020589 [exp] 80 / 7e-16 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 80 / 8e-16 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10019537 [exp] 79 / 1e-15 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10013429 [exp] 80 / 2e-15 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13191 [poplar] [flax] AAA_16 AAA ATPase domain
Representative CDS sequence Show only first row Show all	>Potri.015G084900.1 pacid=42774764 polypeptide=Potri.015G084900.1.p locus=Potri.015G084900 ID=Potri.015G084900.1.v4.1 annot-version=v4.1 ATGGCAACAACTCCCATGGATATATCAATTCAAAAATCTATCGAAACCACCACAACCCATGATGAATCCGATGGACACGGTGTCTCTTTTCCCTCCTCAT CCCCTTCCCCCATTCACACTCATCACAAATTCCTCGTTTCTGTTGAAGTTTGCTTAAAACCCTCAAGCACCGCTCGCATTGAAGATGTTCGGTTAGCTGT TGAAAGAATGCTTGAAAAGAGGAGTTTAAGCTATGCTGATGGACCAATTCCGGTGCCAATTGATGACCAATTTCTATTTGAAAATGTACAAAGAATAAGT GTCTGCGATACAGATGAATGGGTGAACAATCATGATATTCTTCTTTTCTGGCAAGTCAAACCTGTTGTACATGTCTTTCAGCTTAGTGAGGAAGGACCAT GTGAGGAGCTAAGTGGGGATGGCCAACTTTCTAGCTTTAATGAATGGATCCTTCCAGCTATGGAATTTGATGGGATGTGGGAAAGCTTAATTTATGAATC TGGGCTCAAGCAAAGGTTGCTGCGGTATGCAGCCAGTGCATTGCTCTTTACTGAAAAGGGTGTTAATCCTTTTCTTGTTTCATGGAATCGCCTTATTCTC TTACATGGACCTCCAGGGACTGGGAAGACATCTTTATGTAAAGCATTGGCTCAGAAACTATCAATACGATTTAACTCCAGATACCCCCAATGCCAATTGA TTGAAGTGAATGCTCATTCTTTGTTTAGCAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCAAAGCTTTTCCAAAAAATACAGGAAATGATAGAGGAAGA AAACAATCTGGTATTTGTTTTGATTGATGAAGTTGAAAGCCTTGCTGCTGCTAGAAAAGCTGCATTATCTGGTTCTGAACCTTCAGATTCTATTCGAGTT GTGAATGCTCTATTAACGCAGATGGACAAATTGAAAGCATCACCAAATGTGATCATCCTGACTACATCAAATATAACTGCTGCTATTGATATTGCATTTG TTGATCGAGCTGACATCAAAGCATATGTTGGTCCTCCAACTCTTCAAGCTCGTTATGAAATTCTAAGATCCTGCTTGCAAGAACTCCTGCGAACAGGAAT AGTATCAAATTTCCAGGGCTCTGACCATCTCGTGCTTCCAGATTATTCAACCTTGAGAGAGAAATTAAATGCACCAACCGAAGCTCAGCCCGTGCTGAAC TTTTGCAAGCAATTGCTTGAAGCTGCAGAGGCATGTGAGGGGATGAGTGGAAGATCATTAAGAAAACTTCCATTTTTGGCACATGGAGCTCTTTCAGATC CATACAGTTGTAATGCTAGCGAATTCTTGTGTGCAATGATAGATACAGCAAGGAGGGAGCATTCTGAGCTACCTGAATCCTGA
AA sequence Show only first row Show all	>Potri.015G084900.1 pacid=42774764 polypeptide=Potri.015G084900.1.p locus=Potri.015G084900 ID=Potri.015G084900.1.v4.1 annot-version=v4.1 MATTPMDISIQKSIETTTTHDESDGHGVSFPSSSPSPIHTHHKFLVSVEVCLKPSSTARIEDVRLAVERMLEKRSLSYADGPIPVPIDDQFLFENVQRIS VCDTDEWVNNHDILLFWQVKPVVHVFQLSEEGPCEELSGDGQLSSFNEWILPAMEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVNPFLVSWNRLIL LHGPPGTGKTSLCKALAQKLSIRFNSRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMIEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRV VNALLTQMDKLKASPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELLRTGIVSNFQGSDHLVLPDYSTLREKLNAPTEAQPVLN FCKQLLEAAEACEGMSGRSLRKLPFLAHGALSDPYSCNASEFLCAMIDTARREHSELPES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24710			P-loop containing nucleoside t...		Potri.015G084900 [exp]	0	1
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Potri.003G104700 [exp]	14.17	0.7975
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.010G160350 [exp]	17.54	0.6992
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	20.88	0.7956
AT4G13690			unknown protein		Potri.003G177900 [exp]	25.09	0.7801
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.005G210000 [exp]	27.87	0.7921
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Potri.001G050300 [exp]	29.39	0.7917
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Potri.004G085500 [exp]	31.08	0.7049
AT4G01270			RING/U-box superfamily protein...		Potri.014G089800 [exp]	32.40	0.7335
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.009G060200 [exp]	33.39	0.6450	ARP902,Pt-ARP7.2
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	38.88	0.7074

Compare expression of checked genes

Potri.015G084900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.