Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	WR3.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50200 184 / 4e-59 WR3, ATNRT3.1, NRT3.1 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3) AT4G24730 180 / 5e-57 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085100 [exp] 339 / 3e-120 AT5G50200 182 / 3e-58 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3) Potri.012G089300 [exp] 305 / 7e-107 AT4G24730 177 / 6e-56 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041950 [exp] 240 / 9e-81 AT5G50200 206 / 2e-67 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3) Lus10017960 [exp] 132 / 4e-39 AT4G24730 96 / 5e-25 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16974 [poplar] [flax] NAR2 High-affinity nitrate transporter accessory
Representative CDS sequence Show only first row Show all	>Potri.015G085000.1 pacid=42775532 polypeptide=Potri.015G085000.1.p locus=Potri.015G085000 ID=Potri.015G085000.1.v4.1 annot-version=v4.1 ATGGCAGCACGTGCTCTTCTCTTGGCATCACTTGTTCTCTCCTGCTTTCTATTGCCAGCTTGCTATGGAACTGTGCTCTTCTCTTCTCTGCAGAGGACCC TTGAAGTCACGGCCTCACCAACATCCGGACAAGTATTGAAAGGTGGTGTGGACAAAATCACCGTGACATGGGGGCTGAACCAGACCGTCGCAGCTGGGAC TGACTCGACCTACAAGACCATCAAGGTCAAGCTATGCTACGCTCCCATAAGCCAAGTTGACCGTGGGTGGAGGAAAACTGTTGACAATCTAAAAAAGGAC AGGACTTGCCAGCATAAGATCGTTGCTAGACCTTACAACGCTGCTAACAGCACCGCCCAGTCCCATGAGTGGACTGTTGAGCGTGACGTGCCCACTGCCA CGTACTTCGTTCGAGCCTACGCATACGACGCAGATGAAAAGGTGGTGGCTTACGGGCAAACAACAGATGCACGCAAGACCACCAATCTGTTTCGAGTCCA AGCAATCAGTGGACGCCACGTCACAATGGATACTTGCTCAATATGCTTTAGTGTTTTCTCTGTCGTGTCCTTGTTTGGTTTCTTCTACAATGAGAAGAGA AAGGCAAAGAGGCCTCAGTGA
AA sequence Show only first row Show all	>Potri.015G085000.1 pacid=42775532 polypeptide=Potri.015G085000.1.p locus=Potri.015G085000 ID=Potri.015G085000.1.v4.1 annot-version=v4.1 MAARALLLASLVLSCFLLPACYGTVLFSSLQRTLEVTASPTSGQVLKGGVDKITVTWGLNQTVAAGTDSTYKTIKVKLCYAPISQVDRGWRKTVDNLKKD RTCQHKIVARPYNAANSTAQSHEWTVERDVPTATYFVRAYAYDADEKVVAYGQTTDARKTTNLFRVQAISGRHVTMDTCSICFSVFSVVSLFGFFYNEKR KAKRPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Potri.015G085000 [exp]	0	1	WR3.3
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Potri.015G085100 [exp]	1.00	0.9610	Pt-WR3.2
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102700 [exp]	7.93	0.9388
AT5G51160			Ankyrin repeat family protein ...		Potri.012G113800 [exp]	8.24	0.9391
AT1G16260			Wall-associated kinase family ...		Potri.003G186100 [exp]	11.66	0.9385
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G011250 [exp]	11.83	0.9193
AT1G64160			Disease resistance-responsive ...		Potri.001G096560 [exp]	12.48	0.9219
AT1G52190			Major facilitator superfamily ...		Potri.018G041700 [exp]	15.96	0.9290
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G076900 [exp]	16.40	0.7997
AT5G01830			ARM repeat superfamily protein...		Potri.006G107600 [exp]	17.23	0.9203
AT3G19660			unknown protein		Potri.009G085800 [exp]	20.00	0.9130

Compare expression of checked genes

Potri.015G085000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.