Plant FIBer expression Database

Pt-WR3.2 (Potri.015G085100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-WR3.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50200 182 / 3e-58 WR3, ATNRT3.1, NRT3.1 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3)
AT4G24730 174 / 7e-55 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G085000
[exp]
339 / 4e-120 AT5G50200 184 / 5e-59 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3)
Potri.012G089300
[exp]
312 / 1e-109 AT4G24730 177 / 6e-56 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041950
[exp]
238 / 3e-80 AT5G50200 206 / 2e-67 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3)
Lus10017960
[exp]
130 / 2e-38 AT4G24730 96 / 5e-25 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF16974 NAR2 High-affinity nitrate transporter accessory
Representative CDS sequence
>Potri.015G085100.3 pacid=42775269 polypeptide=Potri.015G085100.3.p locus=Potri.015G085100 ID=Potri.015G085100.3.v4.1 annot-version=v4.1
ATGGCAGCACGTGCTCTTCTCTTGGCATCACTTGTTCTCTCCTGCTTTCTATTGCCTTGCTATGGAATTGTGCTCTTCTCTTCTCTGCATAGGACTCTTG
TAGTCACGGCTTCACCAACATCCGGACAAGTATTGAAAGGTGGTGTGGACAAAATCACCGTGACATGGGGGCTGAACCAGACCGTCGCAGCTGGGACTGA
CTCGACCTACAAGACCATCAAGGTCAAGCTATGCTACGCTCCCATAAGCCAAGTTGACCGTGGGTGGAGGAAAACTGTTGACAATCTAAAAAAGGACAGG
ACTTGCCAGCATAAGATCGTTGCTAGACCTTACAACCCTGCTAACAGCACCGCCCAGTCCCATGAGTGGACTGTTGAGCGTGACGTGCCCACTGCCACGT
ACTTCGTTCGAGCCTACGCTTACGACGCAGATGAAAAGGTGGTGGCTTACGGGCAAACAACAGATGCACACAAGACCACCAATCTGTTTCAAGTCCAAGC
AATCAGTGGACGCCACGTCACAATGGATACTTGCTCAATATGCTTTAGTGTTTTCTCTGTCGTGTCCTTGTTTGGTTTCTTCTACAATGAGAAGAGAAAG
GCAAAGAGGTCTCAGTGA
AA sequence
>Potri.015G085100.3 pacid=42775269 polypeptide=Potri.015G085100.3.p locus=Potri.015G085100 ID=Potri.015G085100.3.v4.1 annot-version=v4.1
MAARALLLASLVLSCFLLPCYGIVLFSSLHRTLVVTASPTSGQVLKGGVDKITVTWGLNQTVAAGTDSTYKTIKVKLCYAPISQVDRGWRKTVDNLKKDR
TCQHKIVARPYNPANSTAQSHEWTVERDVPTATYFVRAYAYDADEKVVAYGQTTDAHKTTNLFQVQAISGRHVTMDTCSICFSVFSVVSLFGFFYNEKRK
AKRSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50200 WR3, ATNRT3.1, ... WOUND-RESPONSIVE 3, NITRATE TR... Potri.015G085100
[exp]
0 1 Pt-WR3.2
AT5G50200 WR3, ATNRT3.1, ... WOUND-RESPONSIVE 3, NITRATE TR... Potri.015G085000
[exp]
1.00 0.9610 WR3.3
AT1G72680 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE... Potri.016G023300
[exp]
6.16 0.9221 CADL3
AT4G36740 HD HB-5, ATHB40 homeobox protein 40 (.1) Potri.007G029500
[exp]
7.34 0.9200
AT5G01830 ARM repeat superfamily protein... Potri.006G107600
[exp]
14.83 0.9032
AT3G27150 Galactose oxidase/kelch repeat... Potri.017G069500
[exp]
19.07 0.8891
AT1G18590 SOT17, ATSOT17,... ARABIDOPSIS SULFOTRANSFERASE 5... Potri.011G048200
[exp]
21.63 0.9025
AT1G72680 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE... Potri.016G023360
[exp]
24.65 0.8889
AT1G52190 Major facilitator superfamily ... Potri.018G041700
[exp]
24.89 0.9027
AT1G64160 Disease resistance-responsive ... Potri.001G096560
[exp]
27.92 0.8897
AT3G11260 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, W... Potri.008G065400
[exp]
28.49 0.8709

Potri.015G085100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.