Plant FIBer expression Database

Potri.015G085300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50210 990 / 0 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
AT1G67810 193 / 1e-56 SUFE2 sulfur E2 (.1)
AT4G26500 87 / 5e-18 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G089500
[exp]
551 / 0 AT5G50210 401 / 1e-134 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
Potri.005G112150
[exp]
96 / 2e-23 ND /
Potri.001G468300
[exp]
95 / 9e-21 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Potri.011G165400
[exp]
94 / 2e-20 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043314
[exp]
1040 / 0 AT5G50210 1020 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
Lus10019464
[exp]
1028 / 0 AT5G50210 1016 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
Lus10006468
[exp]
167 / 3e-47 AT1G67810 189 / 1e-59 sulfur E2 (.1)
Lus10011408
[exp]
142 / 3e-38 AT1G67810 167 / 3e-51 sulfur E2 (.1)
Lus10032905
[exp]
92 / 2e-19 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Lus10015605
[exp]
89 / 2e-18 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02445 NadA Quinolinate synthetase A protein
CL0233 SufE_NifU PF02657 SufE Fe-S metabolism associated domain
Representative CDS sequence
>Potri.015G085300.1 pacid=42776668 polypeptide=Potri.015G085300.1.p locus=Potri.015G085300 ID=Potri.015G085300.1.v4.1 annot-version=v4.1
ATGGACTCCTCCACGACAGCAACAATCTCCTCCCTAAAAACGACCATCTCTCCCAACCCTAGCCCTAACCGCACCAAGAAAACCCCTACTTTTCATTACA
AGAAAACCAAACCCCCTTCTTTCTCCACCTTCAAATCTGTTAAATGCATCCACTCACCTCCTCCAAATCCAAAACCCTCAAATTCCTCACCTTTCATCTG
CACAGCAGTCACCTTCTCTCCCTCACAGATAACTGAGCTTGTCCCAAGTAAGCTTCACCATTTAATAACCGAATTCCAGTCCCTCTCTCAACCAGTCGAC
CGTGTTAAACGCCTCCTCCACTATGCAACCTTCCTCTCTCCACTACCAGACTCTTATCGGGTTGATTCGAACCGGGTCATGGGCTGCACTGCCCAGGTCT
GGTTGGAGGCACAGCTAGACCAATATGGGAAGATGAGGTTTTGGGCAGATAGTGATTCAGAGATTACAAGAGGGTTTTGTGCTTGTTTAATTTGGGTGCT
TGATGGGGCGGTGCCAGAGGAGGTTTTGAAGGTGACAACAGAGGATTTGACAGCTTTGAACGTTGGGTTGCCTGTTGGAGCGAGGTCGAGAGTGAATACT
TGGCATAATGTTTTGGTTAGTATGCAAAAGAGAGCGAGGATGTTAGTGGCTGAAAGAGATGGGAAGAAGGATTTCGATCCGTTTCCATCTTTGGTTGTTA
GTTCAGATGGGATTCAGGCGAAGGGGAGTTATGCTGAGGCCCAGGCAAGATATTTGTTCCCAGATGAGTCTAAGGTTCAAGAGCTTGTAAAGGAGCTAAA
GGAGAAGAAAATTGGTGTCGTTGCTCATTTTTACATGGATCCTGAAGTTCAAGGTGTCTTGACTGCTGCACAGAAGCACTGGCCTCACATCCACATATCT
GATTCATTGGTCATGGCAGATAGTGCTGTTAAGATGGCTGAAGCTGGATGCAAATTCATTACTGTTTTGGGTGTAGATTTTATGTCAGAAAATGTGCGTG
CAATCCTTGATCAAGCTGGCTTTGGAGAGGTTGGCGTGTACAGGATGTCAAATGAGCGCATTGGTTGTTCTTTAGCAGATGCTGCGTCTACTCCTGCTTA
TATGAGTTATCTTGGGGCTGCCTCTGGGTCTCCTCCATCCTTGCATGTTATCTACATTAACACTTCACTTGAGACGAAAGCTTATGCTCATGAGCTTGTG
CCTACAATCACTTGTACTTCTTCAAATGTTGTGCAAACTATCCTTCAGGCTTCTGCTCAAATTCCAGATTTAAACATATGGTATGGGCCTGATTCATACA
TGGGTGCCAATATTGCAAAATTGTTCCAGCAGATGACAATGATGTCTGATGAAGAAATTGCCGAGATACATCCAGCACATAATGGAGATTCCATTAGATC
ACTGCTTCCTCGTTTACACTATTATCAGGATGGAACATGTATTGTTCATCATCTATTTGGACATGAAGTTGTGGAGAAAATAAATGACATGTACTGTGAT
GCTTTCTTAACTGCTCATCTTGAGGTCCCTGGAGAAATGTTTTCCCTGGCGATGGAAGCAAAGAGAAGAGGAATGGGAGTAGTGGGTTCCACTCAAAATA
TATTAGATTTTATAAAGCAGAGGGTACAAGAGGCTCTGGATAGAGATGTCAATGATCACCTCCGGTTTGTGTTAGGAACTGAATCAGGAATGGTTACTTC
AATTGTTGCAGCAGTTCGTCATTTGTTAGGTTCTACAAAGTCTTCTGAGAAAGCAAAAGTGAATGTTGAAATTGTCTTTCCAGTCTCATCAGATGCAATA
ACAAGAACATCAACAAATTCGACCTCAGGCCTAAATTCAGTTAAAGTTGGTGACATCATATTGCCTGTTATACCTGGAGCTGCTAGCGGGGAGGGATGCT
CTATTCATGGTGGCTGTGCATCCTGTCCATACATGAAGATGAATTCTCTTAATTCACTTCTAAAAGTTTGCCATCACCTGCCTGGCGAGAAAAATAAAGT
TGCAGCATATGAAGCTGCACGATTTAAATTGCGAACTCCAAATGGAAAATCAATTGCAGATGTTGGTTGTGAACCGATATTGCACATGAGACACTTCCAG
GCTACAAAGGAACTTCCAGATAAGCTTGTTTATCAGGCTCTCTATCCAGACAGCAATGGGAGGTCAATATCATAA
AA sequence
>Potri.015G085300.1 pacid=42776668 polypeptide=Potri.015G085300.1.p locus=Potri.015G085300 ID=Potri.015G085300.1.v4.1 annot-version=v4.1
MDSSTTATISSLKTTISPNPSPNRTKKTPTFHYKKTKPPSFSTFKSVKCIHSPPPNPKPSNSSPFICTAVTFSPSQITELVPSKLHHLITEFQSLSQPVD
RVKRLLHYATFLSPLPDSYRVDSNRVMGCTAQVWLEAQLDQYGKMRFWADSDSEITRGFCACLIWVLDGAVPEEVLKVTTEDLTALNVGLPVGARSRVNT
WHNVLVSMQKRARMLVAERDGKKDFDPFPSLVVSSDGIQAKGSYAEAQARYLFPDESKVQELVKELKEKKIGVVAHFYMDPEVQGVLTAAQKHWPHIHIS
DSLVMADSAVKMAEAGCKFITVLGVDFMSENVRAILDQAGFGEVGVYRMSNERIGCSLADAASTPAYMSYLGAASGSPPSLHVIYINTSLETKAYAHELV
PTITCTSSNVVQTILQASAQIPDLNIWYGPDSYMGANIAKLFQQMTMMSDEEIAEIHPAHNGDSIRSLLPRLHYYQDGTCIVHHLFGHEVVEKINDMYCD
AFLTAHLEVPGEMFSLAMEAKRRGMGVVGSTQNILDFIKQRVQEALDRDVNDHLRFVLGTESGMVTSIVAAVRHLLGSTKSSEKAKVNVEIVFPVSSDAI
TRTSTNSTSGLNSVKVGDIILPVIPGAASGEGCSIHGGCASCPYMKMNSLNSLLKVCHHLPGEKNKVAAYEAARFKLRTPNGKSIADVGCEPILHMRHFQ
ATKELPDKLVYQALYPDSNGRSIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50210 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEAT... Potri.015G085300
[exp]
0 1
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.006G172100
[exp]
2.64 0.9817
AT3G17860 ZIM TIFY6B, JAI3, J... JASMONATE-INSENSITIVE 3, jasmo... Potri.012G044900
[exp]
3.31 0.9649
AT3G44610 Protein kinase superfamily pro... Potri.009G146500
[exp]
4.24 0.9815
AT1G56600 ATGOLS2 galactinol synthase 2 (.1) Potri.013G005900
[exp]
4.89 0.9636
AT5G05220 unknown protein Potri.013G090200
[exp]
5.29 0.9634
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.006G174202
[exp]
5.65 0.9810
AT4G21990 3-Apr, PRH-26, ... PAPS REDUCTASE HOMOLOG 26, APS... Potri.004G011525
[exp]
6.00 0.9685
AT1G20440 AtCOR47, RD17, ... cold-regulated 47 (.1) Potri.002G013200
[exp]
7.14 0.9610
AT5G16970 AT-AER alkenal reductase (.1) Potri.007G143700
[exp]
8.00 0.9696
AT3G49780 ATPSK3(FORMERSY... phytosulfokine 4 precursor (.1... Potri.007G006800
[exp]
9.79 0.9217 Pt-PSK3.1

Potri.015G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.