Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 164 / 2e-46 Protein kinase superfamily protein (.1) AT2G28250 133 / 1e-35 NCRK Protein kinase superfamily protein (.1.2) AT3G21630 128 / 1e-33 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 124 / 3e-32 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT5G49760 123 / 1e-31 Leucine-rich repeat protein kinase family protein (.1) AT2G23770 122 / 2e-31 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G51880 119 / 4e-30 RHS6 root hair specific 6 (.1) AT1G16120 117 / 2e-29 WAKL1 wall associated kinase-like 1 (.1) AT1G51860 117 / 2e-29 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 116 / 3e-29 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010300 [exp] 221 / 8e-68 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 180 / 3e-52 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.014G040000 [exp] 170 / 6e-49 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 154 / 6e-43 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 144 / 3e-39 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G078700 [exp] 143 / 4e-39 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 143 / 9e-39 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 142 / 1e-38 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.014G156400 [exp] 139 / 2e-37 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041323 [exp] 198 / 4e-59 AT2G23770 202 / 2e-56 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037389 [exp] 194 / 2e-57 AT2G33580 202 / 1e-56 Protein kinase superfamily protein (.1) Lus10008586 [exp] 172 / 4e-49 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10000577 [exp] 161 / 2e-45 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 159 / 1e-44 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10039406 [exp] 144 / 6e-40 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10016794 [exp] 140 / 2e-39 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10021889 [exp] 143 / 4e-39 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 141 / 3e-38 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041171 [exp] 140 / 8e-38 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.015G085400.2 pacid=42775858 polypeptide=Potri.015G085400.2.p locus=Potri.015G085400 ID=Potri.015G085400.2.v4.1 annot-version=v4.1 ATGAGGCTTCCAAGATCGGTGTGGAAGTGTATAGAGGTAGAATTGGAGTCAGAGGAAGGTGCTCGCCGTGTCATTTACATTTTGACAAAGATCAATCATC TAAACATTGTAAAGCTTGAAGGAATATACTATGGAGCTAATCCTTATCTTGTATACGAATTCGCTGAGAATGGTAGCTTAAGGGACTGCTTGTCAAATAA GAAATTGGATAGGCAGCTTACATGGTTAAGAAGGATGCAGATTGCTTTTGATCTAGCAGATGCCCTTCACTACTTACACTTCTGCACAGCACCAGCCTTT GTTCATCAAAATATAAACACTAGAAATGTGCTTATAACTGCCAATTGGAGAGCCAAGATTTCTGGGTTTAGACTTGCAAAACCTGTCATTTCTGACGAAG AAAAGGAAGACATTTTCTGGAATAAACATATGACTCCAGGCAGAGAGGCCCATTGGACACCTGAATACCTTACTAATGGTCAGGCCTCTCTACAGGTGGA CGTATTTGCATTTGGAGTTGTTTTGCTTGAGTTAATATCAGGAAAAGATTTGTCTAGGGATGGGAAAATCTTGAAGGATTCAGTCCGTTTTTTATTTGAT GGAGCGTTTGAAGATTCTTCTCATTGCTTGGAAAAGTTGAAGGAATTCATGGATCCTGTTTTGGGAGGAGATTATTCATTGGGTGATGCTATGTGCTTGG CATTCCTGGCCAAGGGTTGCATGGAGGAGGATCCTCATCATCTACCCACCATGAATCATGTTTTGAAAGCTCTTTCAAGAATCGTATAG
AA sequence Show only first row Show all	>Potri.015G085400.2 pacid=42775858 polypeptide=Potri.015G085400.2.p locus=Potri.015G085400 ID=Potri.015G085400.2.v4.1 annot-version=v4.1 MRLPRSVWKCIEVELESEEGARRVIYILTKINHLNIVKLEGIYYGANPYLVYEFAENGSLRDCLSNKKLDRQLTWLRRMQIAFDLADALHYLHFCTAPAF VHQNINTRNVLITANWRAKISGFRLAKPVISDEEKEDIFWNKHMTPGREAHWTPEYLTNGQASLQVDVFAFGVVLLELISGKDLSRDGKILKDSVRFLFD GAFEDSSHCLEKLKEFMDPVLGGDYSLGDAMCLAFLAKGCMEEDPHHLPTMNHVLKALSRIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33580			Protein kinase superfamily pro...		Potri.015G085400 [exp]	0	1
AT1G15190			Fasciclin-like arabinogalactan...		Potri.019G002300 [exp]	5.19	0.6652
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177900 [exp]	17.14	0.7016
					Potri.005G091501 [exp]	18.38	0.6540
					Potri.006G198901 [exp]	76.68	0.6262
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.001G022100 [exp]	79.59	0.5472
					Potri.003G162550 [exp]	112.07	0.5759
AT5G28780			PIF1 helicase (.1)		Potri.001G185950 [exp]	160.02	0.5585
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Potri.005G147100 [exp]	247.74	0.5542	HAT22.2

Compare expression of checked genes

Potri.015G085400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.