Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48270 381 / 8e-128 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48310 380 / 3e-127 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48280 379 / 4e-127 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT1G13080 375 / 3e-125 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT4G13310 374 / 9e-125 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT2G30770 371 / 1e-123 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT3G48290 370 / 2e-123 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT1G11610 363 / 1e-120 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2) AT5G24950 362 / 2e-120 CYP71A15 "cytochrome P450, family 71, subfamily A, polypeptide 15", cytochrome P450, family 71, subfamily A, polypeptide 15 (.1) AT4G13290 361 / 6e-120 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089600 [exp] 605 / 0 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.016G137600 [exp] 556 / 0 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137400 [exp] 518 / 0 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G085800 [exp] 421 / 9e-143 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.015G086000 [exp] 404 / 1e-136 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G090000 [exp] 403 / 4e-136 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.012G089900 [exp] 403 / 4e-136 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.002G025300 [exp] 384 / 9e-129 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.008G184000 [exp] 382 / 4e-128 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019459 [exp] 610 / 0 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10043313 [exp] 492 / 7e-171 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10029787 [exp] 456 / 9e-157 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10043310 [exp] 415 / 3e-142 AT2G30770 329 / 4e-109 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10017961 [exp] 395 / 1e-132 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030708 [exp] 390 / 6e-131 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10016601 [exp] 389 / 3e-130 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 387 / 6e-130 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10041951 [exp] 385 / 5e-129 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10012767 [exp] 385 / 6e-129 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.015G085600.2 pacid=42775685 polypeptide=Potri.015G085600.2.p locus=Potri.015G085600 ID=Potri.015G085600.2.v4.1 annot-version=v4.1 ATGGCTCAGGTGATCATGCTTCGGCAACGGTGCCAGGAACTGCAAAAAATGATCATGCTCAATCCCTTGCTCTGTCCTTTTCTTCTCTTGTCCCTTCTAT TTTTGCTTAGGCTAGTTAAAAGAGACAAATTAAATTTACCTCCATCTCCACCAAAGCTACCCATAATTGGAAATCTTCACCAGCTAGGTAGACTTCATAG ATCTCTCCGAGCCCTTTCTTCAAAATATGGCCCTTTAATGCTTCTACATTTTGGGAAAGTTCCAACTCTGATTGTTTCGTCGGCAGAGGTGGCTCATGAG GTCATGAAAACTCATGACGTAGCTTTTGCAGGAAGGCCTCAAACAAGGGCTGCAGATGTTCTCTTCTATGGATGCGTTGATGTTGCATTTTGTCCCTATG GTGAGTATTGGAGACAAGTGAAGAAGATTTGTGTTCTTGAACTTTTGAGCCAAAAACGGGTGCAAGCATTTCAATTTGTGAGGGAGGAGGAAGTCGCAAA CATGGTGGAGAAGGTGCGGCTTTCATGCCTCAACGGAGCTGCAGTAGATCTTAGTGATATGTTCCTTAGTGTCTCAAACAACATAATATCAAGATCTGCT CTTGGTCGAGTATATGAAAATGAAGGCTGTGATGAGAGTTTTGGAGGATTGTCGAGGAAGGCGATAGACTTGATAGCATCATTTTGCTTCAAAGATATGT TTCACCTTTTGGGATGGATGGATACTCTAACTGGCTTGGTTGCAGGTTTGAAACATACTTCCAAAGCATTGCATAATTTTCTTGATCAAGTGATCGAAGA ACATGAGAGTTTAATGAACAATGACGAATCTGATATGAAAGACATTGTGGATATTCTTCTTGATCTGCAAAAGAATGGAACGCTTGACATTGATCTTACT CGAGAGAACCTTAAAGCAATCCTTATGGACATGTTTGTTGGAGGAACTGATACGACAGCAGCAGCTATGGAATGGGCGATGGCAGAGCTTGTGAAGAATC CTATTGTAATGAAGAAAGCCCAAGAAGAGGTAAGAAGAGTGGTAGGAAAGAAATCAAAGCTCTGTGAGAAGCATATAAATGAGATGGTCTATCTGAAATG TGTTCTCAAAGAAAGCTTAAGGTTACATGCTCCTGCAATGATTGCAAGAGAAACATCTGAAGCCGTTAAACTACAAGGTTATGATATTCCTCCCAAAACA AGAGTGTTGATTAACGCCTGGGCAATTCAAAGGGACCCCAAACAATGGGAAAGGTCTGAAGAGTTTATCCCTGAGAGATTTACTAACATTTCGGTCGATT TTAAAGGTCAACACAACCAATTCATGCCGTTTGGTGGGGGTAGAAGGCTTTGTCCCGGTCTCTCATTTGCAGTTATAGAAGCAGAAATGGTTCTAGCAAA CCTTTTGTACTGGTTTGATTGGAACATACCCCATGGTGGCAATCCAGAAGACATGGACATGTCTGAGTCTCATACACTGATTATTCGTAAGAAGACACCC CTTGTACTTGTTCCAGTAATGCTCTCTCCTTAA
AA sequence Show only first row Show all	>Potri.015G085600.2 pacid=42775685 polypeptide=Potri.015G085600.2.p locus=Potri.015G085600 ID=Potri.015G085600.2.v4.1 annot-version=v4.1 MAQVIMLRQRCQELQKMIMLNPLLCPFLLLSLLFLLRLVKRDKLNLPPSPPKLPIIGNLHQLGRLHRSLRALSSKYGPLMLLHFGKVPTLIVSSAEVAHE VMKTHDVAFAGRPQTRAADVLFYGCVDVAFCPYGEYWRQVKKICVLELLSQKRVQAFQFVREEEVANMVEKVRLSCLNGAAVDLSDMFLSVSNNIISRSA LGRVYENEGCDESFGGLSRKAIDLIASFCFKDMFHLLGWMDTLTGLVAGLKHTSKALHNFLDQVIEEHESLMNNDESDMKDIVDILLDLQKNGTLDIDLT RENLKAILMDMFVGGTDTTAAAMEWAMAELVKNPIVMKKAQEEVRRVVGKKSKLCEKHINEMVYLKCVLKESLRLHAPAMIARETSEAVKLQGYDIPPKT RVLINAWAIQRDPKQWERSEEFIPERFTNISVDFKGQHNQFMPFGGGRRLCPGLSFAVIEAEMVLANLLYWFDWNIPHGGNPEDMDMSESHTLIIRKKTP LVLVPVMLSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085600 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G312600 [exp]	1.41	0.9738
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.009G022400 [exp]	2.44	0.9705
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Potri.018G139400 [exp]	3.46	0.9690	PIN9,Pt-PIN2.4
AT1G73160			UDP-Glycosyltransferase superf...		Potri.011G097000 [exp]	4.24	0.9447
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.007G090100 [exp]	4.47	0.9689
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Potri.002G017900 [exp]	5.56	0.9361	ATEXPA11.2
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.018G008900 [exp]	7.00	0.9620
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G276500 [exp]	7.74	0.9495
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Potri.010G181000 [exp]	8.94	0.9597
AT1G15385			unknown protein		Potri.003G062300 [exp]	9.48	0.9562

Compare expression of checked genes

Potri.015G085600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.