Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24740 746 / 0 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G53570 618 / 0 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G32660 509 / 1e-180 AME3 Protein kinase superfamily protein (.1.2.3) AT5G35980 172 / 8e-47 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G13350 164 / 4e-44 Protein kinase superfamily protein (.1.2) AT3G53640 162 / 5e-44 Protein kinase superfamily protein (.1) AT3G17750 162 / 3e-43 Protein kinase superfamily protein (.1) AT2G40120 159 / 3e-43 Protein kinase superfamily protein (.1) AT1G73460 162 / 4e-43 Protein kinase superfamily protein (.1) AT1G73450 162 / 5e-43 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089700 [exp] 841 / 0 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.010G049100 [exp] 675 / 0 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.016G079900 [exp] 652 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 634 / 0 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G244400 [exp] 545 / 0 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G043400 [exp] 174 / 2e-47 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.013G075300 [exp] 174 / 2e-47 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.010G188400 [exp] 167 / 3e-45 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.007G063100 [exp] 162 / 4e-45 AT2G17530 679 / 0.0 Protein kinase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019458 [exp] 752 / 0 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10043309 [exp] 752 / 0 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10036878 [exp] 676 / 0 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 636 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 634 / 0 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10006230 [exp] 275 / 5e-91 AT4G24740 276 / 8e-93 FUS3-complementing gene 2 (.1.2) Lus10027636 [exp] 201 / 5e-63 AT4G24740 187 / 6e-59 FUS3-complementing gene 2 (.1.2) Lus10009542 [exp] 169 / 1e-45 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 168 / 3e-45 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10031902 [exp] 165 / 4e-44 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G085700.1 pacid=42776118 polypeptide=Potri.015G085700.1.p locus=Potri.015G085700 ID=Potri.015G085700.1.v4.1 annot-version=v4.1 ATGGAGATGGAACACGTGACCATCTTTCCCATAACACACCTGGATCGACCTAGGAAAAGACCTCGTTTCGGCTGGGACGTGCCTCAGGCTCAGGTAGGAA ATTTTTGTGGACAAGAGGTTGGGAATGTAGCAAGCTATGCATCTTCGGGAGCAATCTCAGACCATACTAGTTCTCTGTTTGTTAAAGGAGTGGCTCAAAA TGGTTCTCCCCCATGGAGGGAAGATGACAAGGATGGCCATTACATGTTTGCGCTTGGAGATAATTTAACTTCTCGCTATAAGATACATAACAAAATGGGA GAAGGCACCTTTGGTCAGGTTTTGGAATGCTGGGACAGAGAAAGAAAGGAAATGGTTGCCATCAAAATTGTACGTGGCATCAAGAAATATAAGGAGGCAG CCATGATAGAAATTGAAGTGCTGCAACAGCTTGGTAAACATGATAAAGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATAT CTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTTCGCAAAAACAATTATCGCTCATTTCCTATTGATCATGTCCGTGAGATTGGCAGA CAACTGTTGGAATGTGTAGCATTTATGCACGACCTTCATATGATACATACTGATTTGAAGCCTGAGAACATACTCCTAGTTTCTTCTGACTATGTAAAAG TTCCTGATTACAAGAACTCGACTCGCTCTCCAAAGGACAGTTCCTACTATAAAAGAGTCCCAAAATCAAGTGCCATCAAGGTGATTGATTTTGGTAGCAC TACCTATGAGCGTCAAGATCAGAATTACATTGTATCAACACGACATTACCGGGCACCAGAAGTTATTCTTGGACTTGGATGGAGTTATCCTTGTGATGTG TGGAGTGTTGGTTGCATCTTAGTGGAGTTGTGCACAGGTGAGGCTTTATTTCAAACACATGAAAATTTGGAGCATCTTGCAATGATGGAACGTGTGCTTG GTCCTATGCCACAGAATATGCTGAAGAGAGTGGATCGACATGCAGAGAAGTTTGTTAGAAGGGGTAGATTGGACTGGCCAGAGGGAGCTGCTTCAAGAGA AAGTATCAAAGCTGTTTTGAAGCTACCTCGACTCCAGAATCTAGTAATGCAACATGTGGACCATTCAGCTGGAGATCTTATACATCTCTTGCAAGGATTG CTCAGGTACGATCCCATGGACAGGTTAACAGCTCGAGAAGCTCTCAGACATCCCTTCTTTGCAAAAGATCATCGTAGGATTTGA
AA sequence Show only first row Show all	>Potri.015G085700.1 pacid=42776118 polypeptide=Potri.015G085700.1.p locus=Potri.015G085700 ID=Potri.015G085700.1.v4.1 annot-version=v4.1 MEMEHVTIFPITHLDRPRKRPRFGWDVPQAQVGNFCGQEVGNVASYASSGAISDHTSSLFVKGVAQNGSPPWREDDKDGHYMFALGDNLTSRYKIHNKMG EGTFGQVLECWDRERKEMVAIKIVRGIKKYKEAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDHVREIGR QLLECVAFMHDLHMIHTDLKPENILLVSSDYVKVPDYKNSTRSPKDSSYYKRVPKSSAIKVIDFGSTTYERQDQNYIVSTRHYRAPEVILGLGWSYPCDV WSVGCILVELCTGEALFQTHENLEHLAMMERVLGPMPQNMLKRVDRHAEKFVRRGRLDWPEGAASRESIKAVLKLPRLQNLVMQHVDHSAGDLIHLLQGL LRYDPMDRLTAREALRHPFFAKDHRRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.015G085700 [exp]	0	1
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.016G095750 [exp]	1.73	0.7945
AT1G71696		SOL1.4, SOL1.3,...	SUPPRESSOR OF LLP1 1, carboxyp...		Potri.005G197000 [exp]	3.74	0.7247	SOL1.1
AT5G62760			P-loop containing nucleoside t...		Potri.015G064600 [exp]	4.58	0.8029
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.010G180500 [exp]	4.69	0.7990
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079501 [exp]	6.92	0.7795
AT3G54190			Transducin/WD40 repeat-like su...		Potri.016G142600 [exp]	8.36	0.7690
AT5G27860			unknown protein		Potri.005G023000 [exp]	8.94	0.7577
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Potri.010G215000 [exp]	10.67	0.7601
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Potri.001G246300 [exp]	15.55	0.7448
AT3G09320			DHHC-type zinc finger family p...		Potri.016G100200 [exp]	15.58	0.7576

Compare expression of checked genes

Potri.015G085700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.